Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DUC entry

There are 2 chains in PDB entry 9DUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 321
B
 THR 2LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9DUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 53Right-handed alpha
Helix 2
AA2
A
76 80Right-handed 310
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
100 107Right-handed alpha
Helix 5
AA5
A
108 111Right-handed 310
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
157 161Right-handed 310
Helix 8
AA8
A
167 182Right-handed alpha
Helix 9
AA9
A
185 189Right-handed 310
Helix 10
AB1
A
191 206Right-handed alpha
Helix 11
AB2
A
214 224Right-handed alpha
Helix 12
AB3
A
227 253Right-handed alpha
Helix 13
AB4
A
264 267Right-handed 310
Helix 14
AB5
A
268 275Right-handed alpha
Helix 15
AB6
A
276 282Right-handed alpha
Helix 16
AB7
A
284 286Right-handed 310
Helix 17
AB8
A
287 293Right-handed alpha
Helix 18
AB9
A
303 317Right-handed alpha
Helix 19
AC1
B
36 38Right-handed 310
Helix 20
AC2
B
40 53Right-handed alpha
Helix 21
AC3
B
83 91Right-handed alpha
Helix 22
AC4
B
100 108Right-handed alpha
Helix 23
AC5
B
109 111Right-handed 310
Helix 24
AC6
B
112 114Right-handed 310
Helix 25
AC7
B
157 161Right-handed 310
Helix 26
AC8
B
167 181Right-handed alpha
Helix 27
AC9
B
185 189Right-handed 310
Helix 28
AD1
B
191 206Right-handed alpha
Helix 29
AD2
B
214 224Right-handed alpha
Helix 30
AD3
B
227 253Right-handed alpha
Helix 31
AD4
B
264 267Right-handed 310
Helix 32
AD5
B
268 274Right-handed alpha
Helix 33
AD6
B
276 282Right-handed alpha
Helix 34
AD7
B
284 286Right-handed 310
Helix 35
AD8
B
287 292Right-handed alpha
Helix 36
AD9
B
303 317Right-handed alpha
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There are 6 sheets in PDB entry 9DUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 34first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
58 63parallel
Strand 5
A
94 99parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
81 82anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
296 299anti-parallel
Strand 3
A
258 261parallel
Strand 4
A
130 135parallel
Strand 5
A
139 147anti-parallel
Strand 6
A
150 155anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 34first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
58 63parallel
Strand 5
B
94 99parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
80 82anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
296 299anti-parallel
Strand 3
B
258 261parallel
Strand 4
B
130 135parallel
Strand 5
B
139 147anti-parallel
Strand 6
B
150 154anti-parallel
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