Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DUD entry

There are 2 chains in PDB entry 9DUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7LYS 210
B
 GLN 7LYS 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 9DUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
80 86Right-handed 310
Helix 3
AA3
A
104 118Right-handed alpha
Helix 4
AA4
A
149 153Right-handed 310
Helix 5
AA5
A
159 163Right-handed 310
Helix 6
AA6
A
173 182Right-handed alpha
Helix 7
AA7
A
187 210Right-handed alpha
Helix 8
AA8
B
12 14Right-handed 310
Helix 9
AA9
B
80 86Right-handed 310
Helix 10
AB1
B
104 118Right-handed alpha
Helix 11
AB2
B
149 153Right-handed 310
Helix 12
AB3
B
159 163Right-handed 310
Helix 13
AB4
B
173 182Right-handed alpha
Helix 14
AB5
B
187 210Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9DUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 26first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
49 55anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
59 66anti-parallel
Strand 4
A
140 147parallel
Strand 5
A
124 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
166 172anti-parallel
Strand 5
A
156 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 26first strand
Strand 2
B
30 38anti-parallel
Strand 3
B
49 55anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
59 66anti-parallel
Strand 4
B
140 147parallel
Strand 5
B
124 131anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
166 172anti-parallel
Strand 5
B
156 157anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il