Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DUG entry

There is 1 chain in PDB entry 9DUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -6GLN 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9DUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
56 59Right-handed 310
Helix 5
AA5
A
66 77Right-handed alpha
Helix 6
AA6
A
77 103Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
133 146Right-handed alpha
Helix 9
AA9
A
148 157Right-handed alpha
Helix 10
AB1
A
161 167Right-handed alpha
Helix 11
AB2
A
178 201Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9DUG.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
107 111parallel
Strand 3
A
3 8parallel
Strand 4
A
126 131parallel
Strand 5
A
171 174parallel
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