Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DUM entry

There are 6 chains in PDB entry 9DUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLU 388
B	ALA 3	GLU 388
C	SER 62	LEU 638
D	SER 62	PRO 636
H	ASN 58	ILE 915
G	ASN 263	GLY 917

There are131 helices in PDB entry 9DUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	155	Right-handed alpha
Helix 2	AA2	A	371	376	Right-handed alpha
Helix 3	AA3	A	376	388	Right-handed alpha
Helix 4	AA4	B	255	259	Right-handed 310
Helix 5	AA5	B	322	327	Right-handed alpha
Helix 6	AA6	B	371	388	Right-handed alpha
Helix 7	AA7	C	65	76	Right-handed alpha
Helix 8	AA8	C	97	101	Right-handed 310
Helix 9	AA9	C	104	118	Right-handed alpha
Helix 10	AB1	C	120	139	Right-handed alpha
Helix 11	AB2	C	144	163	Right-handed alpha
Helix 12	AB3	C	165	176	Right-handed alpha
Helix 13	AB4	C	176	186	Right-handed alpha
Helix 14	AB5	C	191	206	Right-handed alpha
Helix 15	AB6	C	207	212	Right-handed 310
Helix 16	AB7	C	213	224	Right-handed alpha
Helix 17	AB8	C	229	241	Right-handed alpha
Helix 18	AB9	C	242	246	Right-handed 310
Helix 19	AC1	C	257	275	Right-handed alpha
Helix 20	AC2	C	306	327	Right-handed alpha
Helix 21	AC3	C	337	349	Right-handed alpha
Helix 22	AC4	C	361	368	Right-handed alpha
Helix 23	AC5	C	368	388	Right-handed alpha
Helix 24	AC6	C	394	409	Right-handed alpha
Helix 25	AC7	C	426	443	Right-handed alpha
Helix 26	AC8	C	452	464	Right-handed alpha
Helix 27	AC9	C	520	536	Right-handed alpha
Helix 28	AD1	C	541	557	Right-handed alpha
Helix 29	AD2	C	568	572	Right-handed 310
Helix 30	AD3	C	573	589	Right-handed alpha
Helix 31	AD4	C	597	609	Right-handed alpha
Helix 32	AD5	C	615	632	Right-handed alpha
Helix 33	AD6	D	62	64	Right-handed 310
Helix 34	AD7	D	65	77	Right-handed alpha
Helix 35	AD8	D	94	98	Right-handed alpha
Helix 36	AD9	D	104	118	Right-handed alpha
Helix 37	AE1	D	120	139	Right-handed alpha
Helix 38	AE2	D	144	162	Right-handed alpha
Helix 39	AE3	D	165	176	Right-handed alpha
Helix 40	AE4	D	176	186	Right-handed alpha
Helix 41	AE5	D	191	205	Right-handed alpha
Helix 42	AE6	D	213	224	Right-handed alpha
Helix 43	AE7	D	229	241	Right-handed alpha
Helix 44	AE8	D	255	279	Right-handed alpha
Helix 45	AE9	D	307	327	Right-handed alpha
Helix 46	AF1	D	337	349	Right-handed alpha
Helix 47	AF2	D	361	368	Right-handed alpha
Helix 48	AF3	D	368	388	Right-handed alpha
Helix 49	AF4	D	389	393	Right-handed 310
Helix 50	AF5	D	394	406	Right-handed alpha
Helix 51	AF6	D	424	443	Right-handed alpha
Helix 52	AF7	D	458	464	Right-handed alpha
Helix 53	AF8	D	520	536	Right-handed alpha
Helix 54	AF9	D	541	557	Right-handed alpha
Helix 55	AG1	D	576	589	Right-handed alpha
Helix 56	AG2	D	597	607	Right-handed alpha
Helix 57	AG3	D	614	627	Right-handed alpha
Helix 58	AG4	D	628	630	Right-handed 310
Helix 59	AG5	H	59	67	Right-handed alpha
Helix 60	AG6	H	70	88	Right-handed alpha
Helix 61	AG7	H	89	95	Right-handed alpha
Helix 62	AG8	H	95	104	Right-handed alpha
Helix 63	AG9	H	111	126	Right-handed alpha
Helix 64	AH1	H	134	136	Right-handed 310
Helix 65	AH2	H	137	150	Right-handed alpha
Helix 66	AH3	H	153	171	Right-handed alpha
Helix 67	AH4	H	171	176	Right-handed alpha
Helix 68	AH5	H	180	191	Right-handed alpha
Helix 69	AH6	H	222	244	Right-handed alpha
Helix 70	AH7	H	313	336	Right-handed alpha
Helix 71	AH8	H	353	371	Right-handed alpha
Helix 72	AH9	H	377	394	Right-handed alpha
Helix 73	AI1	H	431	444	Right-handed alpha
Helix 74	AI2	H	453	470	Right-handed alpha
Helix 75	AI3	H	475	493	Right-handed alpha
Helix 76	AI4	H	495	511	Right-handed alpha
Helix 77	AI5	H	516	532	Right-handed alpha
Helix 78	AI6	H	545	554	Right-handed alpha
Helix 79	AI7	H	554	562	Right-handed alpha
Helix 80	AI8	H	566	582	Right-handed alpha
Helix 81	AI9	H	585	600	Right-handed alpha
Helix 82	AJ1	H	613	621	Right-handed alpha
Helix 83	AJ2	H	622	625	Right-handed 310
Helix 84	AJ3	H	629	642	Right-handed alpha
Helix 85	AJ4	H	647	660	Right-handed alpha
Helix 86	AJ5	H	677	689	Right-handed alpha
Helix 87	AJ6	H	692	702	Right-handed alpha
Helix 88	AJ7	H	722	732	Right-handed alpha
Helix 89	AJ8	H	732	742	Right-handed alpha
Helix 90	AJ9	H	745	761	Right-handed alpha
Helix 91	AK1	H	770	782	Right-handed alpha
Helix 92	AK2	H	793	810	Right-handed alpha
Helix 93	AK3	H	822	836	Right-handed alpha
Helix 94	AK4	H	836	846	Right-handed alpha
Helix 95	AK5	H	853	855	Right-handed 310
Helix 96	AK6	H	856	870	Right-handed alpha
Helix 97	AK7	H	874	879	Right-handed alpha
Helix 98	AK8	H	881	893	Right-handed alpha
Helix 99	AK9	H	904	910	Right-handed alpha
Helix 100	AL1	G	269	274	Right-handed alpha
Helix 101	AL2	G	430	438	Right-handed alpha
Helix 102	AL3	G	439	443	Right-handed 310
Helix 103	AL4	G	459	471	Right-handed alpha
Helix 104	AL5	G	475	493	Right-handed alpha
Helix 105	AL6	G	495	498	Right-handed 310
Helix 106	AL7	G	499	512	Right-handed alpha
Helix 107	AL8	G	516	532	Right-handed alpha
Helix 108	AL9	G	545	554	Right-handed alpha
Helix 109	AM1	G	554	562	Right-handed alpha
Helix 110	AM2	G	566	573	Right-handed alpha
Helix 111	AM3	G	574	582	Right-handed alpha
Helix 112	AM4	G	587	595	Right-handed alpha
Helix 113	AM5	G	595	600	Right-handed alpha
Helix 114	AM6	G	613	620	Right-handed alpha
Helix 115	AM7	G	629	642	Right-handed alpha
Helix 116	AM8	G	646	651	Right-handed alpha
Helix 117	AM9	G	652	660	Right-handed alpha
Helix 118	AN1	G	676	689	Right-handed alpha
Helix 119	AN2	G	692	700	Right-handed alpha
Helix 120	AN3	G	732	743	Right-handed alpha
Helix 121	AN4	G	745	761	Right-handed alpha
Helix 122	AN5	G	770	781	Right-handed alpha
Helix 123	AN6	G	793	810	Right-handed alpha
Helix 124	AN7	G	816	820	Right-handed 310
Helix 125	AN8	G	822	836	Right-handed alpha
Helix 126	AN9	G	836	845	Right-handed alpha
Helix 127	AO1	G	856	868	Right-handed alpha
Helix 128	AO2	G	870	872	Right-handed 310
Helix 129	AO3	G	873	880	Right-handed alpha
Helix 130	AO4	G	880	895	Right-handed alpha
Helix 131	AO5	G	901	915	Right-handed alpha

There are 19 sheets in PDB entry 9DUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	A	6	10	anti-parallel
Strand 4	A	316	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	47	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	72	78	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	95	96	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	113	117	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	145	147	anti-parallel
Strand 4	A	167	168	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	198	200	anti-parallel
Strand 4	A	210	213	anti-parallel
Strand 5	G	265	268	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	242	243	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	284	288	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	303	307	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	313	320	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	51	54	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	77	78	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	95	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	113	115	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	145	147	anti-parallel
Strand 4	B	166	168	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	192	193	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	208	213	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	264	265	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	284	286	anti-parallel
Strand 3	B	293	295	anti-parallel
Strand 4	B	305	307	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	708	709	first strand
Strand 2	H	717	719	anti-parallel
Strand 3	H	766	768	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUM