Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DUO entry

There are 4 chains in PDB entry 9DUO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	SER 390
B	MET 5	SER 390
C	SER 29	PRO 636
D	SER 29	VAL 635

There are 70 helices in PDB entry 9DUO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	156	Right-handed alpha
Helix 2	AA2	A	260	262	Right-handed 310
Helix 3	AA3	A	322	327	Right-handed alpha
Helix 4	AA4	A	362	366	Right-handed 310
Helix 5	AA5	A	371	390	Right-handed alpha
Helix 6	AA6	B	150	155	Right-handed alpha
Helix 7	AA7	B	322	327	Right-handed alpha
Helix 8	AA8	B	371	390	Right-handed alpha
Helix 9	AA9	C	30	42	Right-handed alpha
Helix 10	AB1	C	65	77	Right-handed alpha
Helix 11	AB2	C	89	100	Right-handed alpha
Helix 12	AB3	C	101	103	Right-handed 310
Helix 13	AB4	C	104	118	Right-handed alpha
Helix 14	AB5	C	120	139	Right-handed alpha
Helix 15	AB6	C	144	163	Right-handed alpha
Helix 16	AB7	C	165	176	Right-handed alpha
Helix 17	AB8	C	176	186	Right-handed alpha
Helix 18	AB9	C	188	190	Right-handed 310
Helix 19	AC1	C	191	206	Right-handed alpha
Helix 20	AC2	C	207	212	Right-handed 310
Helix 21	AC3	C	213	224	Right-handed alpha
Helix 22	AC4	C	229	241	Right-handed alpha
Helix 23	AC5	C	242	246	Right-handed 310
Helix 24	AC6	C	256	279	Right-handed alpha
Helix 25	AC7	C	306	328	Right-handed alpha
Helix 26	AC8	C	337	351	Right-handed alpha
Helix 27	AC9	C	361	388	Right-handed alpha
Helix 28	AD1	C	389	393	Right-handed 310
Helix 29	AD2	C	394	409	Right-handed alpha
Helix 30	AD3	C	424	443	Right-handed alpha
Helix 31	AD4	C	444	446	Right-handed 310
Helix 32	AD5	C	451	467	Right-handed alpha
Helix 33	AD6	C	518	537	Right-handed alpha
Helix 34	AD7	C	541	559	Right-handed alpha
Helix 35	AD8	C	568	571	Right-handed 310
Helix 36	AD9	C	572	589	Right-handed alpha
Helix 37	AE1	C	597	609	Right-handed alpha
Helix 38	AE2	C	613	632	Right-handed alpha
Helix 39	AE3	D	30	43	Right-handed alpha
Helix 40	AE4	D	65	77	Right-handed alpha
Helix 41	AE5	D	88	99	Right-handed alpha
Helix 42	AE6	D	100	103	Right-handed 310
Helix 43	AE7	D	104	119	Right-handed alpha
Helix 44	AE8	D	120	140	Right-handed alpha
Helix 45	AE9	D	144	163	Right-handed alpha
Helix 46	AF1	D	165	176	Right-handed alpha
Helix 47	AF2	D	176	186	Right-handed alpha
Helix 48	AF3	D	188	190	Right-handed 310
Helix 49	AF4	D	191	206	Right-handed alpha
Helix 50	AF5	D	207	212	Right-handed 310
Helix 51	AF6	D	213	223	Right-handed alpha
Helix 52	AF7	D	229	241	Right-handed alpha
Helix 53	AF8	D	242	246	Right-handed 310
Helix 54	AF9	D	255	279	Right-handed alpha
Helix 55	AG1	D	306	328	Right-handed alpha
Helix 56	AG2	D	337	350	Right-handed alpha
Helix 57	AG3	D	352	356	Right-handed 310
Helix 58	AG4	D	361	388	Right-handed alpha
Helix 59	AG5	D	389	393	Right-handed 310
Helix 60	AG6	D	394	409	Right-handed alpha
Helix 61	AG7	D	424	443	Right-handed alpha
Helix 62	AG8	D	444	446	Right-handed 310
Helix 63	AG9	D	452	466	Right-handed alpha
Helix 64	AH1	D	518	537	Right-handed alpha
Helix 65	AH2	D	538	540	Right-handed 310
Helix 66	AH3	D	541	561	Right-handed alpha
Helix 67	AH4	D	568	571	Right-handed 310
Helix 68	AH5	D	572	589	Right-handed alpha
Helix 69	AH6	D	597	609	Right-handed alpha
Helix 70	AH7	D	613	632	Right-handed alpha

There are 15 sheets in PDB entry 9DUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	A	6	12	anti-parallel
Strand 4	A	313	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	47	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	77	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	102	107	anti-parallel
Strand 4	A	113	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	135	140	anti-parallel
Strand 3	A	145	149	anti-parallel
Strand 4	A	166	168	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	188	193	anti-parallel
Strand 3	A	197	202	anti-parallel
Strand 4	A	208	213	anti-parallel
Strand 5	A	253	254	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	223	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	264	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	292	297	anti-parallel
Strand 4	A	302	308	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	D	334	336	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	313	320	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	47	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	76	78	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	94	99	anti-parallel
Strand 3	B	102	107	anti-parallel
Strand 4	B	113	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	135	140	anti-parallel
Strand 3	B	145	149	anti-parallel
Strand 4	B	166	168	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	197	202	anti-parallel
Strand 4	B	208	213	anti-parallel
Strand 5	B	253	254	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	223	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	264	265	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	292	297	anti-parallel
Strand 4	B	302	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DUO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUO