Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DUS entry

There are 5 chains in PDB entry 9DUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ARG 1411
B
 ILE 325PRO 413
C
 ALA 323LYS 507
D
 LYS 324ASP 380
E
 LYS 324ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9DUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 32Right-handed alpha
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
59 77Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
103 135Right-handed alpha
Helix 6
AA6
A
143 151Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
161 183Right-handed alpha
Helix 9
AA9
A
224 248Right-handed alpha
Helix 10
AB1
A
251 273Right-handed alpha
Helix 11
AB2
A
275 293Right-handed alpha
Helix 12
AB3
A
302 319Right-handed alpha
Helix 13
AB4
A
323 339Right-handed alpha
Helix 14
AB5
A
346 353Right-handed 310
Helix 15
AB6
A
362 375Right-handed alpha
Helix 16
AB7
A
382 404Right-handed alpha
Helix 17
AB8
A
418 428Right-handed alpha
Helix 18
AB9
A
432 439Right-handed alpha
Helix 19
AC1
A
440 444Right-handed 310
Helix 20
AC2
A
476 480Right-handed 310
Helix 21
AC3
A
481 485Right-handed 310
Helix 22
AC4
A
497 505Right-handed alpha
Helix 23
AC5
A
509 519Right-handed alpha
Helix 24
AC6
A
550 567Right-handed alpha
Helix 25
AC7
A
568 573Right-handed alpha
Helix 26
AC8
A
666 671Right-handed alpha
Helix 27
AC9
A
672 688Right-handed alpha
Helix 28
AD1
A
694 701Right-handed alpha
Helix 29
AD2
A
721 725Right-handed 310
Helix 30
AD3
A
743 763Right-handed alpha
Helix 31
AD4
A
788 815Right-handed alpha
Helix 32
AD5
A
846 852Right-handed alpha
Helix 33
AD6
A
863 882Right-handed alpha
Helix 34
AD7
A
884 906Right-handed alpha
Helix 35
AD8
A
913 923Right-handed alpha
Helix 36
AD9
A
923 933Right-handed alpha
Helix 37
AE1
A
934 938Right-handed 310
Helix 38
AE2
A
955 970Right-handed alpha
Helix 39
AE3
A
975 983Right-handed alpha
Helix 40
AE4
A
990 997Right-handed alpha
Helix 41
AE5
A
1008 1024Right-handed alpha
Helix 42
AE6
A
1027 1031Right-handed 310
Helix 43
AE7
A
1037 1050Right-handed alpha
Helix 44
AE8
A
1056 1067Right-handed alpha
Helix 45
AE9
A
1067 1079Right-handed alpha
Helix 46
AF1
A
1081 1093Right-handed alpha
Helix 47
AF2
A
1096 1104Right-handed alpha
Helix 48
AF3
A
1105 1120Right-handed alpha
Helix 49
AF4
A
1132 1145Right-handed alpha
Helix 50
AF5
A
1145 1150Right-handed alpha
Helix 51
AF6
A
1161 1165Right-handed alpha
Helix 52
AF7
A
1176 1183Right-handed alpha
Helix 53
AF8
A
1232 1249Right-handed alpha
Helix 54
AF9
A
1252 1264Right-handed alpha
Helix 55
AG1
A
1270 1278Right-handed alpha
Helix 56
AG2
A
1304 1309Right-handed alpha
Helix 57
AG3
A
1330 1348Right-handed alpha
Helix 58
AG4
B
326 340Right-handed alpha
Helix 59
AG5
B
342 368Right-handed alpha
Helix 60
AG6
B
405 410Right-handed alpha
Helix 61
AG7
C
324 371Right-handed alpha
Helix 62
AG8
C
457 470Right-handed alpha
Helix 63
AG9
C
474 488Right-handed alpha
Helix 64
AH1
C
490 507Right-handed alpha
Helix 65
AH2
D
325 369Right-handed alpha
Helix 66
AH3
E
325 341Right-handed alpha
Helix 67
AH4
E
341 374Right-handed alpha
Helix 68
AH5
E
383 387Right-handed 310
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There are 7 sheets in PDB entry 9DUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
219 223parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
201 205anti-parallel
Strand 5
A
196 197anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
D
371 374anti-parallel
Strand 3
B
397 398parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
447 448anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
530 534anti-parallel
Strand 3
A
705 707parallel
Strand 4
A
731 732anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 770first strand
Strand 2
A
774 784anti-parallel
Strand 3
A
653 663anti-parallel
Strand 4
A
824 826anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 831first strand
Strand 2
A
836 838anti-parallel
Strand 3
A
841 843anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1166 1171first strand
Strand 2
A
1359 1365anti-parallel
Strand 3
A
1187 1192anti-parallel
Strand 4
A
1312 1314anti-parallel
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