Analysis of interatomic Contacts of Structural Units in PDB entry:
9DUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DUT entry

There are 7 chains in PDB entry 9DUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ASP 2183
B
 LYS 324PRO 413
C
 LYS 324LYS 507
D
 LYS 324ASP 380
E
 LYS 324ILE 397
F
 VAL 52LEU 175
G
 LYS 65LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 9DUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
44 56Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
103 136Right-handed alpha
Helix 6
AA6
A
143 151Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
161 182Right-handed alpha
Helix 9
AA9
A
224 248Right-handed alpha
Helix 10
AB1
A
251 273Right-handed alpha
Helix 11
AB2
A
275 282Right-handed alpha
Helix 12
AB3
A
282 293Right-handed alpha
Helix 13
AB4
A
298 301Right-handed 310
Helix 14
AB5
A
302 319Right-handed alpha
Helix 15
AB6
A
323 339Right-handed alpha
Helix 16
AB7
A
346 353Right-handed 310
Helix 17
AB8
A
362 375Right-handed alpha
Helix 18
AB9
A
382 404Right-handed alpha
Helix 19
AC1
A
418 428Right-handed alpha
Helix 20
AC2
A
432 439Right-handed alpha
Helix 21
AC3
A
440 444Right-handed 310
Helix 22
AC4
A
460 465Right-handed alpha
Helix 23
AC5
A
472 480Right-handed 310
Helix 24
AC6
A
497 504Right-handed alpha
Helix 25
AC7
A
509 519Right-handed alpha
Helix 26
AC8
A
550 567Right-handed alpha
Helix 27
AC9
A
568 573Right-handed alpha
Helix 28
AD1
A
666 671Right-handed alpha
Helix 29
AD2
A
672 688Right-handed alpha
Helix 30
AD3
A
694 701Right-handed alpha
Helix 31
AD4
A
721 725Right-handed 310
Helix 32
AD5
A
743 763Right-handed alpha
Helix 33
AD6
A
788 815Right-handed alpha
Helix 34
AD7
A
847 852Right-handed alpha
Helix 35
AD8
A
863 881Right-handed alpha
Helix 36
AD9
A
884 906Right-handed alpha
Helix 37
AE1
A
916 923Right-handed alpha
Helix 38
AE2
A
923 933Right-handed alpha
Helix 39
AE3
A
955 970Right-handed alpha
Helix 40
AE4
A
975 983Right-handed alpha
Helix 41
AE5
A
990 997Right-handed alpha
Helix 42
AE6
A
1008 1024Right-handed alpha
Helix 43
AE7
A
1037 1051Right-handed alpha
Helix 44
AE8
A
1056 1066Right-handed alpha
Helix 45
AE9
A
1067 1079Right-handed alpha
Helix 46
AF1
A
1081 1093Right-handed alpha
Helix 47
AF2
A
1096 1104Right-handed alpha
Helix 48
AF3
A
1105 1120Right-handed alpha
Helix 49
AF4
A
1132 1145Right-handed alpha
Helix 50
AF5
A
1145 1150Right-handed alpha
Helix 51
AF6
A
1161 1165Right-handed alpha
Helix 52
AF7
A
1176 1182Right-handed alpha
Helix 53
AF8
A
1232 1249Right-handed alpha
Helix 54
AF9
A
1252 1265Right-handed alpha
Helix 55
AG1
A
1270 1278Right-handed alpha
Helix 56
AG2
A
1303 1307Right-handed 310
Helix 57
AG3
A
1330 1348Right-handed alpha
Helix 58
AG4
A
1428 1451Right-handed alpha
Helix 59
AG5
A
1467 1478Right-handed alpha
Helix 60
AG6
A
1479 1503Right-handed alpha
Helix 61
AG7
A
1505 1521Right-handed alpha
Helix 62
AG8
A
1526 1535Right-handed alpha
Helix 63
AG9
A
1535 1542Right-handed alpha
Helix 64
AH1
A
1561 1582Right-handed alpha
Helix 65
AH2
A
1599 1620Right-handed alpha
Helix 66
AH3
A
1632 1651Right-handed alpha
Helix 67
AH4
A
1670 1685Right-handed alpha
Helix 68
AH5
A
1725 1735Right-handed alpha
Helix 69
AH6
A
1750 1755Right-handed alpha
Helix 70
AH7
A
1763 1772Right-handed alpha
Helix 71
AH8
A
1792 1803Right-handed alpha
Helix 72
AH9
A
1828 1839Right-handed alpha
Helix 73
AI1
A
1859 1870Right-handed alpha
Helix 74
AI2
A
1889 1907Right-handed alpha
Helix 75
AI3
A
1925 1934Right-handed alpha
Helix 76
AI4
A
1969 1981Right-handed alpha
Helix 77
AI5
A
1985 1999Right-handed alpha
Helix 78
AI6
A
2000 2006Right-handed alpha
Helix 79
AI7
A
2015 2019Right-handed 310
Helix 80
AI8
A
2022 2030Right-handed alpha
Helix 81
AI9
A
2039 2045Right-handed alpha
Helix 82
AJ1
A
2057 2070Right-handed alpha
Helix 83
AJ2
A
2083 2110Right-handed alpha
Helix 84
AJ3
A
2116 2127Right-handed alpha
Helix 85
AJ4
A
2143 2153Right-handed alpha
Helix 86
AJ5
A
2164 2182Right-handed alpha
Helix 87
AJ6
B
325 340Right-handed alpha
Helix 88
AJ7
B
342 371Right-handed alpha
Helix 89
AJ8
B
403 410Right-handed alpha
Helix 90
AJ9
C
325 372Right-handed alpha
Helix 91
AK1
C
457 471Right-handed alpha
Helix 92
AK2
C
474 488Right-handed alpha
Helix 93
AK3
C
490 507Right-handed alpha
Helix 94
AK4
D
325 369Right-handed alpha
Helix 95
AK5
E
325 340Right-handed alpha
Helix 96
AK6
E
342 374Right-handed alpha
Helix 97
AK7
E
383 387Right-handed 310
Helix 98
AK8
F
53 85Right-handed alpha
Helix 99
AK9
F
101 115Right-handed alpha
Helix 100
AL1
F
120 131Right-handed alpha
Helix 101
AL2
F
134 152Right-handed alpha
Helix 102
AL3
F
156 161Right-handed alpha
Helix 103
AL4
F
162 170Right-handed alpha
Helix 104
AL5
G
66 85Right-handed alpha
Helix 105
AL6
G
103 115Right-handed alpha
Helix 106
AL7
G
120 131Right-handed alpha
Helix 107
AL8
G
134 152Right-handed alpha
Helix 108
AL9
G
156 161Right-handed alpha
Helix 109
AM1
G
162 170Right-handed alpha
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There are 12 sheets in PDB entry 9DUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
360 361parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
219 223parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
201 205anti-parallel
Strand 5
A
196 197anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
D
371 374anti-parallel
Strand 3
B
397 398parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
447 448anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
530 534anti-parallel
Strand 3
A
705 707parallel
Strand 4
A
731 732anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 771first strand
Strand 2
A
774 784anti-parallel
Strand 3
A
653 663anti-parallel
Strand 4
A
824 826anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 831first strand
Strand 2
A
836 838anti-parallel
Strand 3
A
841 843anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1166 1171first strand
Strand 2
A
1359 1365anti-parallel
Strand 3
A
1187 1192anti-parallel
Strand 4
A
1312 1314anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1196 1197first strand
Strand 2
A
1353 1354anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1592 1593first strand
Strand 2
A
1666 1667parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1722 1724first strand
Strand 2
A
1937 1943anti-parallel
Strand 3
A
1955 1962anti-parallel
Strand 4
A
1908 1918anti-parallel
Strand 5
A
1875 1880parallel
Strand 6
A
1785 1787parallel
Strand 7
A
1808 1809parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2128 2131first strand
Strand 2
A
2159 2162anti-parallel
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