Analysis of interatomic Contacts of Structural Units in PDB entry:
9DV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DV8 entry

There is 1 chain in PDB entry 9DV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -3ARG 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9DV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 72Right-handed alpha
Helix 2
AA2
A
81 83Right-handed 310
Helix 3
AA3
A
106 117Right-handed alpha
Helix 4
AA4
A
118 120Right-handed 310
Helix 5
AA5
A
123 138Right-handed alpha
Helix 6
AA6
A
149 155Right-handed 310
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
165 173Right-handed alpha
Helix 9
AA9
A
180 196Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
248 258Right-handed alpha
Helix 12
AB3
A
260 271Right-handed alpha
Helix 13
AB4
A
272 279Right-handed alpha
Helix 14
AB5
A
283 293Right-handed alpha
Helix 15
AB6
A
295 321Right-handed alpha
Helix 16
AB7
A
331 337Right-handed alpha
Helix 17
AB8
A
337 347Right-handed alpha
Helix 18
AB9
A
348 352Right-handed 310
Helix 19
AC1
A
356 363Right-handed alpha
Helix 20
AC2
A
387 402Right-handed alpha
Helix 21
AC3
A
406 410Right-handed 310
Helix 22
AC4
A
412 416Right-handed 310
Helix 23
AC5
A
421 435Right-handed alpha
Helix 24
AC6
A
436 442Right-handed 310
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There are 2 sheets in PDB entry 9DV8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
24 32anti-parallel
Strand 4
A
12 19anti-parallel
Strand 5
A
2 9anti-parallel
Strand 6
A
85 92parallel
Strand 7
A
143 147parallel
Strand 8
A
103 104anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
326 330parallel
Strand 5
A
380 383parallel
Strand 6
A
370 371anti-parallel
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