Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVB entry

There are 10 chains in PDB entry 9DVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	HIS 80	THR 196
C	HIS 4	ALA 63
D	ALA 2	LEU 142
H	GLU 1	PRO 223
L	ILE 2	ARG 212
N	HIS 80	THR 196
O	HIS 4	ALA 63
P	ALA 2	LEU 142
W	GLU 1	PRO 223
X	ILE 2	ARG 212

There are 35 helices in PDB entry 9DVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	80	107	Right-handed alpha
Helix 2	AA2	B	109	130	Right-handed alpha
Helix 3	AA3	B	149	168	Right-handed alpha
Helix 4	AA4	B	170	196	Right-handed alpha
Helix 5	AA5	C	5	24	Right-handed alpha
Helix 6	AA6	C	45	60	Right-handed alpha
Helix 7	AA7	D	3	19	Right-handed alpha
Helix 8	AA8	D	30	41	Right-handed alpha
Helix 9	AA9	D	42	60	Right-handed alpha
Helix 10	AB1	D	68	79	Right-handed alpha
Helix 11	AB2	D	95	117	Right-handed alpha
Helix 12	AB3	D	125	140	Right-handed alpha
Helix 13	AB4	H	28	32	Right-handed 310
Helix 14	AB5	H	87	91	Right-handed 310
Helix 15	AB6	H	104	109	Right-handed alpha
Helix 16	AB7	H	195	199	Right-handed 310
Helix 17	AB8	L	122	129	Right-handed alpha
Helix 18	AB9	L	184	190	Right-handed alpha
Helix 19	AC1	N	81	107	Right-handed alpha
Helix 20	AC2	N	109	130	Right-handed alpha
Helix 21	AC3	N	148	168	Right-handed alpha
Helix 22	AC4	N	170	196	Right-handed alpha
Helix 23	AC5	O	5	25	Right-handed alpha
Helix 24	AC6	O	48	63	Right-handed alpha
Helix 25	AC7	P	3	19	Right-handed alpha
Helix 26	AC8	P	28	41	Right-handed alpha
Helix 27	AC9	P	42	60	Right-handed alpha
Helix 28	AD1	P	66	79	Right-handed alpha
Helix 29	AD2	P	95	116	Right-handed alpha
Helix 30	AD3	P	129	140	Right-handed alpha
Helix 31	AD4	W	28	32	Right-handed 310
Helix 32	AD5	W	104	109	Right-handed alpha
Helix 33	AD6	W	166	168	Right-handed 310
Helix 34	AD7	X	122	129	Right-handed alpha
Helix 35	AD8	X	184	190	Right-handed alpha

There are 20 sheets in PDB entry 9DVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	146	155	anti-parallel
Strand 3	H	186	194	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	146	155	anti-parallel
Strand 3	H	186	194	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	210	anti-parallel
Strand 3	H	215	221	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	7	first strand
Strand 2	W	18	25	anti-parallel
Strand 3	W	78	83	anti-parallel
Strand 4	W	69	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	11	12	first strand
Strand 2	W	118	122	parallel
Strand 3	W	92	96	anti-parallel
Strand 4	W	34	39	anti-parallel
Strand 5	W	45	52	anti-parallel
Strand 6	W	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	130	134	first strand
Strand 2	W	145	155	anti-parallel
Strand 3	W	186	195	anti-parallel
Strand 4	W	174	175	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	130	134	first strand
Strand 2	W	145	155	anti-parallel
Strand 3	W	186	195	anti-parallel
Strand 4	W	179	180	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	161	164	first strand
Strand 2	W	204	210	anti-parallel
Strand 3	W	215	221	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	19	25	anti-parallel
Strand 3	X	70	75	anti-parallel
Strand 4	X	62	67	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	12	first strand
Strand 2	X	103	106	parallel
Strand 3	X	85	90	anti-parallel
Strand 4	X	33	38	anti-parallel
Strand 5	X	45	48	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	12	first strand
Strand 2	X	103	106	parallel
Strand 3	X	85	90	anti-parallel
Strand 4	X	98	99	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	115	119	first strand
Strand 2	X	130	138	anti-parallel
Strand 3	X	176	183	anti-parallel
Strand 4	X	160	164	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	154	156	first strand
Strand 2	X	146	151	anti-parallel
Strand 3	X	192	198	anti-parallel
Strand 4	X	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVB