Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVE entry

There are 7 chains in PDB entry 9DVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	PHE 64
A	ASN 68	GLY 221
B	VAL 6	PHE 64
B	ASN 68	ARG 224
C	VAL 6	PHE 64
C	ASN 68	SER 220
D	PRO 9	GLU 29

There are 7 helices in PDB entry 9DVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	B	57	62	Right-handed alpha
Helix 4	AA4	B	82	86	Right-handed 310
Helix 5	AA5	C	57	62	Right-handed alpha
Helix 6	AA6	C	82	86	Right-handed 310
Helix 7	AA7	D	57	62	Right-handed alpha

There are 5 sheets in PDB entry 9DVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	155	166	anti-parallel
Strand 3	A	171	182	anti-parallel
Strand 4	A	90	98	anti-parallel
Strand 5	A	103	113	anti-parallel
Strand 6	A	116	126	anti-parallel
Strand 7	A	11	21	parallel
Strand 8	A	24	35	anti-parallel
Strand 9	A	40	49	anti-parallel
Strand 10	A	209	219	anti-parallel
Strand 11	A	192	203	anti-parallel
Strand 12	A	145	152	anti-parallel
Strand 13	A	155	166	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	155	166	anti-parallel
Strand 3	B	171	182	anti-parallel
Strand 4	B	90	98	anti-parallel
Strand 5	B	103	113	anti-parallel
Strand 6	B	116	126	anti-parallel
Strand 7	B	11	21	parallel
Strand 8	B	24	35	anti-parallel
Strand 9	B	40	49	anti-parallel
Strand 10	B	209	220	anti-parallel
Strand 11	B	192	203	anti-parallel
Strand 12	B	145	152	anti-parallel
Strand 13	B	155	166	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	155	166	anti-parallel
Strand 3	C	171	182	anti-parallel
Strand 4	C	90	98	anti-parallel
Strand 5	C	103	113	anti-parallel
Strand 6	C	116	126	anti-parallel
Strand 7	C	11	21	parallel
Strand 8	C	24	35	anti-parallel
Strand 9	C	40	49	anti-parallel
Strand 10	C	209	219	anti-parallel
Strand 11	C	192	203	anti-parallel
Strand 12	C	145	152	anti-parallel
Strand 13	C	155	166	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	33	35	anti-parallel
Strand 3	D	40	49	anti-parallel
Strand 4	D	24	29	anti-parallel
Strand 5	D	14	21	anti-parallel
Strand 6	D	118	126	parallel
Strand 7	D	103	111	anti-parallel
Strand 8	D	90	98	anti-parallel
Strand 9	D	171	182	anti-parallel
Strand 10	D	157	159	anti-parallel
Strand 11	D	148	150	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	142	first strand
Strand 2	D	162	166	anti-parallel
Strand 3	D	171	182	anti-parallel
Strand 4	D	90	98	anti-parallel
Strand 5	D	103	111	anti-parallel
Strand 6	D	118	126	anti-parallel
Strand 7	D	14	21	parallel
Strand 8	D	24	29	anti-parallel
Strand 9	D	40	49	anti-parallel
Strand 10	D	209	219	anti-parallel
Strand 11	D	193	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVE