Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVF entry

There are 12 chains in PDB entry 9DVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 11	TRP 301
B	HIS 11	TRP 301
C	HIS 11	TRP 301
D	HIS 11	TRP 301
E	HIS 11	TRP 301
F	HIS 11	TRP 301
G	HIS 11	TRP 301
H	HIS 11	TRP 301
I	HIS 11	TRP 301
J	HIS 11	TRP 301
K	HIS 11	TRP 301
L	HIS 11	TRP 301

There are192 helices in PDB entry 9DVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	34	45	Right-handed alpha
Helix 3	AA3	A	55	63	Right-handed alpha
Helix 4	AA4	A	70	81	Right-handed alpha
Helix 5	AA5	A	95	104	Right-handed alpha
Helix 6	AA6	A	124	128	Right-handed 310
Helix 7	AA7	A	138	149	Right-handed alpha
Helix 8	AA8	A	164	181	Right-handed alpha
Helix 9	AA9	A	185	196	Right-handed alpha
Helix 10	AB1	A	199	210	Right-handed alpha
Helix 11	AB2	A	224	234	Right-handed alpha
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	250	264	Right-handed alpha
Helix 14	AB5	A	267	276	Right-handed alpha
Helix 15	AB6	A	286	290	Right-handed 310
Helix 16	AB7	A	291	299	Right-handed 310
Helix 17	AB8	B	13	18	Right-handed alpha
Helix 18	AB9	B	34	45	Right-handed alpha
Helix 19	AC1	B	55	63	Right-handed alpha
Helix 20	AC2	B	70	81	Right-handed alpha
Helix 21	AC3	B	95	104	Right-handed alpha
Helix 22	AC4	B	124	128	Right-handed 310
Helix 23	AC5	B	138	149	Right-handed alpha
Helix 24	AC6	B	164	181	Right-handed alpha
Helix 25	AC7	B	185	196	Right-handed alpha
Helix 26	AC8	B	199	210	Right-handed alpha
Helix 27	AC9	B	224	234	Right-handed alpha
Helix 28	AD1	B	242	247	Right-handed alpha
Helix 29	AD2	B	250	264	Right-handed alpha
Helix 30	AD3	B	267	276	Right-handed alpha
Helix 31	AD4	B	286	290	Right-handed 310
Helix 32	AD5	B	291	299	Right-handed 310
Helix 33	AD6	C	13	18	Right-handed alpha
Helix 34	AD7	C	34	45	Right-handed alpha
Helix 35	AD8	C	55	63	Right-handed alpha
Helix 36	AD9	C	70	81	Right-handed alpha
Helix 37	AE1	C	95	104	Right-handed alpha
Helix 38	AE2	C	124	128	Right-handed 310
Helix 39	AE3	C	138	149	Right-handed alpha
Helix 40	AE4	C	164	181	Right-handed alpha
Helix 41	AE5	C	185	196	Right-handed alpha
Helix 42	AE6	C	199	210	Right-handed alpha
Helix 43	AE7	C	224	234	Right-handed alpha
Helix 44	AE8	C	242	247	Right-handed alpha
Helix 45	AE9	C	250	264	Right-handed alpha
Helix 46	AF1	C	267	276	Right-handed alpha
Helix 47	AF2	C	286	290	Right-handed 310
Helix 48	AF3	C	291	299	Right-handed 310
Helix 49	AF4	D	13	18	Right-handed alpha
Helix 50	AF5	D	34	45	Right-handed alpha
Helix 51	AF6	D	55	63	Right-handed alpha
Helix 52	AF7	D	70	81	Right-handed alpha
Helix 53	AF8	D	95	104	Right-handed alpha
Helix 54	AF9	D	124	128	Right-handed 310
Helix 55	AG1	D	138	149	Right-handed alpha
Helix 56	AG2	D	164	181	Right-handed alpha
Helix 57	AG3	D	185	196	Right-handed alpha
Helix 58	AG4	D	199	210	Right-handed alpha
Helix 59	AG5	D	224	234	Right-handed alpha
Helix 60	AG6	D	242	247	Right-handed alpha
Helix 61	AG7	D	250	264	Right-handed alpha
Helix 62	AG8	D	267	276	Right-handed alpha
Helix 63	AG9	D	286	290	Right-handed 310
Helix 64	AH1	D	291	299	Right-handed 310
Helix 65	AH2	E	13	18	Right-handed alpha
Helix 66	AH3	E	34	45	Right-handed alpha
Helix 67	AH4	E	55	63	Right-handed alpha
Helix 68	AH5	E	70	81	Right-handed alpha
Helix 69	AH6	E	95	104	Right-handed alpha
Helix 70	AH7	E	124	128	Right-handed 310
Helix 71	AH8	E	138	149	Right-handed alpha
Helix 72	AH9	E	164	181	Right-handed alpha
Helix 73	AI1	E	185	196	Right-handed alpha
Helix 74	AI2	E	199	210	Right-handed alpha
Helix 75	AI3	E	224	234	Right-handed alpha
Helix 76	AI4	E	242	247	Right-handed alpha
Helix 77	AI5	E	250	264	Right-handed alpha
Helix 78	AI6	E	267	276	Right-handed alpha
Helix 79	AI7	E	286	290	Right-handed 310
Helix 80	AI8	E	291	299	Right-handed 310
Helix 81	AI9	F	13	18	Right-handed alpha
Helix 82	AJ1	F	34	45	Right-handed alpha
Helix 83	AJ2	F	55	63	Right-handed alpha
Helix 84	AJ3	F	70	81	Right-handed alpha
Helix 85	AJ4	F	95	104	Right-handed alpha
Helix 86	AJ5	F	124	128	Right-handed 310
Helix 87	AJ6	F	138	149	Right-handed alpha
Helix 88	AJ7	F	164	181	Right-handed alpha
Helix 89	AJ8	F	185	196	Right-handed alpha
Helix 90	AJ9	F	199	210	Right-handed alpha
Helix 91	AK1	F	224	234	Right-handed alpha
Helix 92	AK2	F	242	247	Right-handed alpha
Helix 93	AK3	F	250	264	Right-handed alpha
Helix 94	AK4	F	267	276	Right-handed alpha
Helix 95	AK5	F	286	290	Right-handed 310
Helix 96	AK6	F	291	299	Right-handed 310
Helix 97	AK7	G	13	18	Right-handed alpha
Helix 98	AK8	G	34	45	Right-handed alpha
Helix 99	AK9	G	55	63	Right-handed alpha
Helix 100	AL1	G	70	81	Right-handed alpha
Helix 101	AL2	G	95	104	Right-handed alpha
Helix 102	AL3	G	124	128	Right-handed 310
Helix 103	AL4	G	138	149	Right-handed alpha
Helix 104	AL5	G	164	181	Right-handed alpha
Helix 105	AL6	G	185	196	Right-handed alpha
Helix 106	AL7	G	199	210	Right-handed alpha
Helix 107	AL8	G	224	234	Right-handed alpha
Helix 108	AL9	G	242	247	Right-handed alpha
Helix 109	AM1	G	250	264	Right-handed alpha
Helix 110	AM2	G	267	276	Right-handed alpha
Helix 111	AM3	G	286	290	Right-handed 310
Helix 112	AM4	G	291	299	Right-handed 310
Helix 113	AM5	H	13	18	Right-handed alpha
Helix 114	AM6	H	34	45	Right-handed alpha
Helix 115	AM7	H	55	63	Right-handed alpha
Helix 116	AM8	H	70	81	Right-handed alpha
Helix 117	AM9	H	95	104	Right-handed alpha
Helix 118	AN1	H	124	128	Right-handed 310
Helix 119	AN2	H	138	149	Right-handed alpha
Helix 120	AN3	H	164	181	Right-handed alpha
Helix 121	AN4	H	185	196	Right-handed alpha
Helix 122	AN5	H	199	210	Right-handed alpha
Helix 123	AN6	H	224	234	Right-handed alpha
Helix 124	AN7	H	242	247	Right-handed alpha
Helix 125	AN8	H	250	264	Right-handed alpha
Helix 126	AN9	H	267	276	Right-handed alpha
Helix 127	AO1	H	286	290	Right-handed 310
Helix 128	AO2	H	291	299	Right-handed 310
Helix 129	AO3	I	13	18	Right-handed alpha
Helix 130	AO4	I	34	45	Right-handed alpha
Helix 131	AO5	I	55	63	Right-handed alpha
Helix 132	AO6	I	70	81	Right-handed alpha
Helix 133	AO7	I	95	104	Right-handed alpha
Helix 134	AO8	I	124	128	Right-handed 310
Helix 135	AO9	I	138	149	Right-handed alpha
Helix 136	AP1	I	164	181	Right-handed alpha
Helix 137	AP2	I	185	196	Right-handed alpha
Helix 138	AP3	I	199	210	Right-handed alpha
Helix 139	AP4	I	224	234	Right-handed alpha
Helix 140	AP5	I	242	247	Right-handed alpha
Helix 141	AP6	I	250	264	Right-handed alpha
Helix 142	AP7	I	267	276	Right-handed alpha
Helix 143	AP8	I	286	290	Right-handed 310
Helix 144	AP9	I	291	299	Right-handed 310
Helix 145	AQ1	J	13	18	Right-handed alpha
Helix 146	AQ2	J	34	45	Right-handed alpha
Helix 147	AQ3	J	55	63	Right-handed alpha
Helix 148	AQ4	J	70	81	Right-handed alpha
Helix 149	AQ5	J	95	104	Right-handed alpha
Helix 150	AQ6	J	124	128	Right-handed 310
Helix 151	AQ7	J	138	149	Right-handed alpha
Helix 152	AQ8	J	164	181	Right-handed alpha
Helix 153	AQ9	J	185	196	Right-handed alpha
Helix 154	AR1	J	199	210	Right-handed alpha
Helix 155	AR2	J	224	234	Right-handed alpha
Helix 156	AR3	J	242	247	Right-handed alpha
Helix 157	AR4	J	250	264	Right-handed alpha
Helix 158	AR5	J	267	276	Right-handed alpha
Helix 159	AR6	J	286	290	Right-handed 310
Helix 160	AR7	J	291	299	Right-handed 310
Helix 161	AR8	K	13	18	Right-handed alpha
Helix 162	AR9	K	34	45	Right-handed alpha
Helix 163	AS1	K	55	63	Right-handed alpha
Helix 164	AS2	K	70	81	Right-handed alpha
Helix 165	AS3	K	95	104	Right-handed alpha
Helix 166	AS4	K	124	128	Right-handed 310
Helix 167	AS5	K	138	149	Right-handed alpha
Helix 168	AS6	K	164	181	Right-handed alpha
Helix 169	AS7	K	185	196	Right-handed alpha
Helix 170	AS8	K	199	210	Right-handed alpha
Helix 171	AS9	K	224	234	Right-handed alpha
Helix 172	AT1	K	242	247	Right-handed alpha
Helix 173	AT2	K	250	264	Right-handed alpha
Helix 174	AT3	K	267	276	Right-handed alpha
Helix 175	AT4	K	286	290	Right-handed 310
Helix 176	AT5	K	291	299	Right-handed 310
Helix 177	AT6	L	13	18	Right-handed alpha
Helix 178	AT7	L	34	45	Right-handed alpha
Helix 179	AT8	L	55	63	Right-handed alpha
Helix 180	AT9	L	70	81	Right-handed alpha
Helix 181	AU1	L	95	104	Right-handed alpha
Helix 182	AU2	L	124	128	Right-handed 310
Helix 183	AU3	L	138	149	Right-handed alpha
Helix 184	AU4	L	164	181	Right-handed alpha
Helix 185	AU5	L	185	196	Right-handed alpha
Helix 186	AU6	L	199	210	Right-handed alpha
Helix 187	AU7	L	224	234	Right-handed alpha
Helix 188	AU8	L	242	247	Right-handed alpha
Helix 189	AU9	L	250	264	Right-handed alpha
Helix 190	AV1	L	267	276	Right-handed alpha
Helix 191	AV2	L	286	290	Right-handed 310
Helix 192	AV3	L	291	299	Right-handed 310

There are 12 sheets in PDB entry 9DVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	153	155	parallel
Strand 3	A	132	136	parallel
Strand 4	A	107	110	parallel
Strand 5	A	85	89	parallel
Strand 6	A	48	51	parallel
Strand 7	A	27	32	parallel
Strand 8	A	238	241	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	153	155	parallel
Strand 3	B	132	136	parallel
Strand 4	B	107	110	parallel
Strand 5	B	85	89	parallel
Strand 6	B	48	51	parallel
Strand 7	B	27	32	parallel
Strand 8	B	238	241	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	153	155	parallel
Strand 3	C	132	136	parallel
Strand 4	C	107	110	parallel
Strand 5	C	85	89	parallel
Strand 6	C	48	51	parallel
Strand 7	C	27	32	parallel
Strand 8	C	238	241	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	153	155	parallel
Strand 3	D	132	136	parallel
Strand 4	D	107	110	parallel
Strand 5	D	85	89	parallel
Strand 6	D	48	51	parallel
Strand 7	D	27	32	parallel
Strand 8	D	238	241	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	153	155	parallel
Strand 3	E	132	136	parallel
Strand 4	E	107	110	parallel
Strand 5	E	85	89	parallel
Strand 6	E	48	51	parallel
Strand 7	E	27	32	parallel
Strand 8	E	238	241	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	217	first strand
Strand 2	F	153	155	parallel
Strand 3	F	132	136	parallel
Strand 4	F	107	110	parallel
Strand 5	F	85	89	parallel
Strand 6	F	48	51	parallel
Strand 7	F	27	32	parallel
Strand 8	F	238	241	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	217	first strand
Strand 2	G	153	155	parallel
Strand 3	G	132	136	parallel
Strand 4	G	107	110	parallel
Strand 5	G	85	89	parallel
Strand 6	G	48	51	parallel
Strand 7	G	27	32	parallel
Strand 8	G	238	241	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	217	first strand
Strand 2	H	153	155	parallel
Strand 3	H	132	136	parallel
Strand 4	H	107	110	parallel
Strand 5	H	85	89	parallel
Strand 6	H	48	51	parallel
Strand 7	H	27	32	parallel
Strand 8	H	238	241	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	216	217	first strand
Strand 2	I	153	155	parallel
Strand 3	I	132	136	parallel
Strand 4	I	107	110	parallel
Strand 5	I	85	89	parallel
Strand 6	I	48	51	parallel
Strand 7	I	27	32	parallel
Strand 8	I	238	241	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	216	217	first strand
Strand 2	J	153	155	parallel
Strand 3	J	132	136	parallel
Strand 4	J	107	110	parallel
Strand 5	J	85	89	parallel
Strand 6	J	48	51	parallel
Strand 7	J	27	32	parallel
Strand 8	J	238	241	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	216	217	first strand
Strand 2	K	153	155	parallel
Strand 3	K	132	136	parallel
Strand 4	K	107	110	parallel
Strand 5	K	85	89	parallel
Strand 6	K	48	51	parallel
Strand 7	K	27	32	parallel
Strand 8	K	238	241	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	216	217	first strand
Strand 2	L	153	155	parallel
Strand 3	L	132	136	parallel
Strand 4	L	107	110	parallel
Strand 5	L	85	89	parallel
Strand 6	L	48	51	parallel
Strand 7	L	27	32	parallel
Strand 8	L	238	241	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVF