Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVH entry

There are 2 chains in PDB entry 9DVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 9	ASP 397
B	SER 9	ARG 281

There are 35 helices in PDB entry 9DVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	37	54	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	94	106	Right-handed alpha
Helix 5	AA5	A	116	120	Right-handed 310
Helix 6	AA6	A	167	175	Right-handed alpha
Helix 7	AA7	A	176	180	Right-handed 310
Helix 8	AA8	A	197	202	Right-handed alpha
Helix 9	AA9	A	202	209	Right-handed alpha
Helix 10	AB1	A	221	231	Right-handed alpha
Helix 11	AB2	A	240	250	Right-handed alpha
Helix 12	AB3	A	251	255	Right-handed 310
Helix 13	AB4	A	268	279	Right-handed alpha
Helix 14	AB5	A	290	294	Right-handed 310
Helix 15	AB6	A	355	362	Right-handed alpha
Helix 16	AB7	B	10	22	Right-handed alpha
Helix 17	AB8	B	37	55	Right-handed alpha
Helix 18	AB9	B	69	82	Right-handed alpha
Helix 19	AC1	B	94	106	Right-handed alpha
Helix 20	AC2	B	116	120	Right-handed 310
Helix 21	AC3	B	167	175	Right-handed alpha
Helix 22	AC4	B	176	180	Right-handed 310
Helix 23	AC5	B	197	202	Right-handed alpha
Helix 24	AC6	B	202	209	Right-handed alpha
Helix 25	AC7	B	221	231	Right-handed alpha
Helix 26	AC8	B	240	250	Right-handed alpha
Helix 27	AC9	B	251	255	Right-handed 310
Helix 28	AD1	B	268	279	Right-handed alpha
Helix 29	AD2	B	290	294	Right-handed 310
Helix 30	AD3	B	355	362	Right-handed alpha
Helix 31	AD4	C	3	7	Right-handed 310
Helix 32	AD5	C	43	55	Right-handed alpha
Helix 33	AD6	C	60	66	Right-handed alpha
Helix 34	AD7	D	3	7	Right-handed 310
Helix 35	AD8	D	43	55	Right-handed alpha

There are 14 sheets in PDB entry 9DVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	36	first strand
Strand 2	A	26	30	anti-parallel
Strand 3	A	211	214	parallel
Strand 4	A	186	189	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	61	65	parallel
Strand 3	A	109	112	parallel
Strand 4	A	125	128	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	351	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	259	263	parallel
Strand 3	A	283	288	parallel
Strand 4	A	298	302	anti-parallel
Strand 5	A	316	317	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	326	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	373	383	anti-parallel
Strand 4	A	363	365	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	326	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	373	383	anti-parallel
Strand 4	A	389	394	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	26	30	anti-parallel
Strand 3	B	211	214	parallel
Strand 4	B	186	189	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	61	64	parallel
Strand 3	B	109	112	parallel
Strand 4	B	125	128	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	152	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	351	352	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	259	263	parallel
Strand 3	B	283	288	parallel
Strand 4	B	298	302	anti-parallel
Strand 5	B	316	317	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	326	first strand
Strand 2	B	339	345	anti-parallel
Strand 3	B	373	383	anti-parallel
Strand 4	B	363	365	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	326	first strand
Strand 2	B	339	345	anti-parallel
Strand 3	B	373	383	anti-parallel
Strand 4	B	389	394	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	12	17	anti-parallel
Strand 3	C	35	42	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	26	first strand
Strand 2	D	12	17	anti-parallel
Strand 3	D	35	42	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVH