Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVI entry

There are 6 chains in PDB entry 9DVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 279
B	VAL 384	ASP 615
C	ALA 2	ARG 279
D	VAL 384	ASP 615
S	MET 1	ARG 77
T	MET 1	ARG 77

There are 34 helices in PDB entry 9DVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	18	30	Right-handed alpha
Helix 3	AA3	A	42	57	Right-handed alpha
Helix 4	AA4	A	59	66	Right-handed alpha
Helix 5	AA5	A	94	101	Right-handed alpha
Helix 6	AA6	A	126	133	Right-handed alpha
Helix 7	AA7	A	202	205	Right-handed 310
Helix 8	AA8	A	262	279	Right-handed alpha
Helix 9	AA9	B	496	500	Right-handed 310
Helix 10	AB1	B	502	547	Right-handed alpha
Helix 11	AB2	B	550	567	Right-handed alpha
Helix 12	AB3	B	573	592	Right-handed alpha
Helix 13	AB4	C	6	12	Right-handed alpha
Helix 14	AB5	C	18	33	Right-handed alpha
Helix 15	AB6	C	40	56	Right-handed alpha
Helix 16	AB7	C	59	67	Right-handed alpha
Helix 17	AB8	C	94	101	Right-handed alpha
Helix 18	AB9	C	126	133	Right-handed alpha
Helix 19	AC1	C	202	205	Right-handed 310
Helix 20	AC2	C	262	279	Right-handed alpha
Helix 21	AC3	D	496	500	Right-handed 310
Helix 22	AC4	D	502	547	Right-handed alpha
Helix 23	AC5	D	550	567	Right-handed alpha
Helix 24	AC6	D	573	592	Right-handed alpha
Helix 25	AC7	S	11	17	Right-handed alpha
Helix 26	AC8	S	19	30	Right-handed alpha
Helix 27	AC9	S	46	55	Right-handed alpha
Helix 28	AD1	S	56	60	Right-handed 310
Helix 29	AD2	S	63	65	Right-handed 310
Helix 30	AD3	S	66	77	Right-handed alpha
Helix 31	AD4	T	13	17	Right-handed 310
Helix 32	AD5	T	19	29	Right-handed alpha
Helix 33	AD6	T	44	57	Right-handed alpha
Helix 34	AD7	T	67	77	Right-handed alpha

There are 16 sheets in PDB entry 9DVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	125	first strand
Strand 2	A	174	180	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	192	193	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	251	256	parallel
Strand 3	A	232	233	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	222	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	246	247	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	406	first strand
Strand 2	B	393	397	anti-parallel
Strand 3	B	430	436	anti-parallel
Strand 4	B	446	453	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	419	420	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	478	484	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	125	first strand
Strand 2	C	174	180	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	147	149	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	192	193	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	251	256	parallel
Strand 3	C	232	233	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	217	222	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	246	247	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	406	first strand
Strand 2	D	393	396	anti-parallel
Strand 3	D	431	436	anti-parallel
Strand 4	D	446	452	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	420	first strand
Strand 2	D	466	472	anti-parallel
Strand 3	D	478	484	anti-parallel
Strand 4	D	489	495	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVI