Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVQ entry

There are 3 chains in PDB entry 9DVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 39	SER 757
B	MET 39	SER 757
G	VAL 119	SER 240

There are 36 helices in PDB entry 9DVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	49	Right-handed alpha
Helix 2	AA2	A	91	98	Right-handed alpha
Helix 3	AA3	A	198	204	Right-handed alpha
Helix 4	AA4	A	333	335	Right-handed 310
Helix 5	AA5	A	383	387	Right-handed 310
Helix 6	AA6	A	414	418	Right-handed 310
Helix 7	AA7	A	457	460	Right-handed 310
Helix 8	AA8	A	491	498	Right-handed alpha
Helix 9	AA9	A	556	565	Right-handed alpha
Helix 10	AB1	A	581	587	Right-handed alpha
Helix 11	AB2	A	594	611	Right-handed alpha
Helix 12	AB3	A	625	635	Right-handed alpha
Helix 13	AB4	A	652	656	Right-handed 310
Helix 14	AB5	A	657	665	Right-handed alpha
Helix 15	AB6	A	673	679	Right-handed alpha
Helix 16	AB7	A	680	681	Right-handed 310
Helix 17	AB8	A	682	690	Right-handed 310
Helix 18	AB9	A	707	720	Right-handed alpha
Helix 19	AC1	A	738	756	Right-handed alpha
Helix 20	AC2	B	43	49	Right-handed alpha
Helix 21	AC3	B	91	98	Right-handed alpha
Helix 22	AC4	B	198	205	Right-handed alpha
Helix 23	AC5	B	333	335	Right-handed 310
Helix 24	AC6	B	383	387	Right-handed 310
Helix 25	AC7	B	414	418	Right-handed 310
Helix 26	AC8	B	457	459	Right-handed 310
Helix 27	AC9	B	491	498	Right-handed alpha
Helix 28	AD1	B	556	565	Right-handed alpha
Helix 29	AD2	B	581	586	Right-handed alpha
Helix 30	AD3	B	594	611	Right-handed alpha
Helix 31	AD4	B	625	635	Right-handed alpha
Helix 32	AD5	B	657	666	Right-handed alpha
Helix 33	AD6	B	673	680	Right-handed alpha
Helix 34	AD7	B	682	690	Right-handed 310
Helix 35	AD8	B	707	720	Right-handed alpha
Helix 36	AD9	B	738	756	Right-handed alpha

There are 26 sheets in PDB entry 9DVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	66	70	anti-parallel
Strand 3	A	76	80	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	111	120	anti-parallel
Strand 3	A	126	134	anti-parallel
Strand 4	A	139	140	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	170	173	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	212	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	261	268	anti-parallel
Strand 4	A	278	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	246	251	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	300	first strand
Strand 2	A	303	310	anti-parallel
Strand 3	A	315	324	anti-parallel
Strand 4	A	329	331	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	300	first strand
Strand 2	A	303	310	anti-parallel
Strand 3	A	315	324	anti-parallel
Strand 4	A	337	341	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	388	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	403	first strand
Strand 2	A	407	412	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	435	438	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	455	first strand
Strand 2	A	462	469	anti-parallel
Strand 3	A	473	477	anti-parallel
Strand 4	A	484	489	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	513	first strand
Strand 2	A	516	524	anti-parallel
Strand 3	A	568	573	anti-parallel
Strand 4	A	534	540	parallel
Strand 5	A	613	623	parallel
Strand 6	A	643	647	parallel
Strand 7	A	693	699	parallel
Strand 8	A	725	729	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	66	70	anti-parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	85	90	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	120	anti-parallel
Strand 3	B	126	134	anti-parallel
Strand 4	B	139	140	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	170	173	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	261	268	anti-parallel
Strand 4	B	278	279	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	238	first strand
Strand 2	B	246	251	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	300	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	315	324	anti-parallel
Strand 4	B	329	331	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	300	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	315	324	anti-parallel
Strand 4	B	337	341	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	375	380	anti-parallel
Strand 4	B	388	389	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	403	first strand
Strand 2	B	407	412	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	436	438	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	455	first strand
Strand 2	B	461	469	anti-parallel
Strand 3	B	473	478	anti-parallel
Strand 4	B	484	489	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	512	first strand
Strand 2	B	517	524	anti-parallel
Strand 3	B	568	573	anti-parallel
Strand 4	B	534	540	parallel
Strand 5	B	613	623	parallel
Strand 6	B	643	647	parallel
Strand 7	B	693	699	parallel
Strand 8	B	725	729	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	134	142	anti-parallel
Strand 3	G	195	201	anti-parallel
Strand 4	G	185	190	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	129	first strand
Strand 2	G	234	238	parallel
Strand 3	G	209	215	anti-parallel
Strand 4	G	151	156	anti-parallel
Strand 5	G	162	168	anti-parallel
Strand 6	G	175	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVQ