Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVS entry

There are 9 chains in PDB entry 9DVS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	T 52	T 70
2	A 45	A 54
A	THR 2	SER 227
B	THR 2	SER 227
C	HIS 13	ALA 1074
D	GLU 5	HIS 624
E	ASP 8	ASN 69
F	ALA 4	LYS 1237
G	TYR 86	GLU 321

There are110 helices in PDB entry 9DVS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	46	Right-handed alpha
Helix 2	AA2	A	73	82	Right-handed alpha
Helix 3	AA3	A	109	111	Right-handed 310
Helix 4	AA4	A	204	221	Right-handed alpha
Helix 5	AA5	B	30	46	Right-handed alpha
Helix 6	AA6	B	73	83	Right-handed alpha
Helix 7	AA7	B	107	111	Right-handed 310
Helix 8	AA8	B	204	221	Right-handed alpha
Helix 9	AA9	C	21	32	Right-handed alpha
Helix 10	AB1	C	32	39	Right-handed alpha
Helix 11	AB2	C	56	59	Right-handed 310
Helix 12	AB3	C	67	75	Right-handed alpha
Helix 13	AB4	C	182	189	Right-handed alpha
Helix 14	AB5	C	192	200	Right-handed alpha
Helix 15	AB6	C	202	214	Right-handed alpha
Helix 16	AB7	C	217	230	Right-handed alpha
Helix 17	AB8	C	236	249	Right-handed alpha
Helix 18	AB9	C	256	269	Right-handed alpha
Helix 19	AC1	C	280	297	Right-handed alpha
Helix 20	AC2	C	316	342	Right-handed alpha
Helix 21	AC3	C	349	354	Right-handed alpha
Helix 22	AC4	C	356	370	Right-handed alpha
Helix 23	AC5	C	380	388	Right-handed alpha
Helix 24	AC6	C	412	416	Right-handed 310
Helix 25	AC7	C	472	476	Right-handed 310
Helix 26	AC8	C	527	531	Right-handed 310
Helix 27	AC9	C	533	537	Right-handed 310
Helix 28	AD1	C	538	549	Right-handed alpha
Helix 29	AD2	C	567	572	Right-handed alpha
Helix 30	AD3	C	676	681	Right-handed alpha
Helix 31	AD4	C	714	718	Right-handed 310
Helix 32	AD5	C	791	795	Right-handed 310
Helix 33	AD6	C	855	859	Right-handed 310
Helix 34	AD7	C	865	881	Right-handed alpha
Helix 35	AD8	C	896	914	Right-handed alpha
Helix 36	AD9	C	915	919	Right-handed 310
Helix 37	AE1	C	978	982	Right-handed 310
Helix 38	AE2	C	988	999	Right-handed alpha
Helix 39	AE3	C	1001	1009	Right-handed alpha
Helix 40	AE4	C	1016	1028	Right-handed alpha
Helix 41	AE5	C	1037	1050	Right-handed alpha
Helix 42	AE6	D	17	26	Right-handed alpha
Helix 43	AE7	D	94	100	Right-handed 310
Helix 44	AE8	D	113	118	Right-handed alpha
Helix 45	AE9	D	122	129	Right-handed alpha
Helix 46	AF1	D	131	140	Right-handed alpha
Helix 47	AF2	D	162	174	Right-handed alpha
Helix 48	AF3	D	188	199	Right-handed alpha
Helix 49	AF4	D	200	214	Right-handed alpha
Helix 50	AF5	D	216	237	Right-handed alpha
Helix 51	AF6	D	239	242	Right-handed 310
Helix 52	AF7	D	252	256	Right-handed 310
Helix 53	AF8	D	269	292	Right-handed alpha
Helix 54	AF9	D	294	314	Right-handed alpha
Helix 55	AG1	D	333	337	Right-handed 310
Helix 56	AG2	D	342	348	Right-handed alpha
Helix 57	AG3	D	376	383	Right-handed alpha
Helix 58	AG4	D	383	395	Right-handed alpha
Helix 59	AG5	D	399	409	Right-handed alpha
Helix 60	AG6	D	411	423	Right-handed alpha
Helix 61	AG7	D	436	438	Right-handed 310
Helix 62	AG8	D	456	458	Right-handed 310
Helix 63	AG9	D	459	464	Right-handed alpha
Helix 64	AH1	D	479	489	Right-handed alpha
Helix 65	AH2	D	491	495	Right-handed 310
Helix 66	AH3	D	510	521	Right-handed alpha
Helix 67	AH4	D	536	547	Right-handed alpha
Helix 68	AH5	D	608	624	Right-handed alpha
Helix 69	AH6	E	9	21	Right-handed alpha
Helix 70	AH7	E	25	46	Right-handed alpha
Helix 71	AH8	E	55	68	Right-handed alpha
Helix 72	AH9	F	16	32	Right-handed alpha
Helix 73	AI1	F	32	55	Right-handed alpha
Helix 74	AI2	F	68	89	Right-handed alpha
Helix 75	AI3	F	93	123	Right-handed alpha
Helix 76	AI4	F	127	135	Right-handed alpha
Helix 77	AI5	F	143	149	Right-handed alpha
Helix 78	AI6	F	175	211	Right-handed alpha
Helix 79	AI7	F	241	246	Right-handed alpha
Helix 80	AI8	F	272	283	Right-handed alpha
Helix 81	AI9	F	302	307	Right-handed alpha
Helix 82	AJ1	F	321	332	Right-handed alpha
Helix 83	AJ2	F	333	337	Right-handed 310
Helix 84	AJ3	F	616	620	Right-handed 310
Helix 85	AJ4	F	646	648	Right-handed 310
Helix 86	AJ5	F	698	705	Right-handed alpha
Helix 87	AJ6	F	899	901	Right-handed 310
Helix 88	AJ7	F	912	916	Right-handed 310
Helix 89	AJ8	F	994	1003	Right-handed alpha
Helix 90	AJ9	F	1072	1088	Right-handed alpha
Helix 91	AK1	F	1090	1117	Right-handed alpha
Helix 92	AK2	F	1122	1134	Right-handed alpha
Helix 93	AK3	F	1155	1169	Right-handed alpha
Helix 94	AK4	F	1191	1197	Right-handed alpha
Helix 95	AK5	F	1200	1212	Right-handed alpha
Helix 96	AK6	F	1219	1227	Right-handed alpha
Helix 97	AK7	F	1232	1236	Right-handed 310
Helix 98	AK8	G	89	100	Right-handed alpha
Helix 99	AK9	G	105	134	Right-handed alpha
Helix 100	AL1	G	138	146	Right-handed alpha
Helix 101	AL2	G	149	170	Right-handed alpha
Helix 102	AL3	G	171	180	Right-handed alpha
Helix 103	AL4	G	181	183	Right-handed 310
Helix 104	AL5	G	188	207	Right-handed alpha
Helix 105	AL6	G	208	212	Right-handed 310
Helix 106	AL7	G	214	235	Right-handed alpha
Helix 107	AL8	G	241	263	Right-handed alpha
Helix 108	AL9	G	267	276	Right-handed alpha
Helix 109	AM1	G	278	289	Right-handed alpha
Helix 110	AM2	G	306	310	Right-handed 310

There are 52 sheets in PDB entry 9DVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	191	199	anti-parallel
Strand 4	A	172	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	101	first strand
Strand 2	A	134	148	anti-parallel
Strand 3	A	48	57	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	101	first strand
Strand 2	A	134	148	anti-parallel
Strand 3	A	167	169	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	118	119	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	125	129	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	18	28	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	172	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	101	first strand
Strand 2	B	134	145	anti-parallel
Strand 3	B	48	57	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	117	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	127	129	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	79	90	anti-parallel
Strand 4	C	60	62	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	79	90	anti-parallel
Strand 4	C	96	107	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	120	124	anti-parallel
Strand 3	C	373	375	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	126	130	anti-parallel
Strand 3	C	390	392	parallel
Strand 4	C	433	435	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	140	first strand
Strand 2	C	146	153	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	170	174	anti-parallel
Strand 5	C	180	181	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	467	470	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	461	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	479	480	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	500	first strand
Strand 2	C	505	508	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	581	first strand
Strand 2	C	637	641	anti-parallel
Strand 3	C	624	625	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	590	first strand
Strand 2	C	594	598	anti-parallel
Strand 3	C	604	608	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	926	927	first strand
Strand 2	C	942	951	anti-parallel
Strand 3	C	821	824	anti-parallel
Strand 4	C	829	836	anti-parallel
Strand 5	C	671	675	parallel
Strand 6	C	852	854	anti-parallel
Strand 7	C	654	660	parallel
Strand 8	C	942	951	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	697	first strand
Strand 2	C	802	814	anti-parallel
Strand 3	C	782	790	anti-parallel
Strand 4	C	732	733	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	742	745	anti-parallel
Strand 3	C	769	771	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	738	740	first strand
Strand 2	C	774	775	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	961	963	first strand
Strand 2	D	356	363	anti-parallel
Strand 3	D	471	475	anti-parallel
Strand 4	D	427	431	anti-parallel
Strand 5	D	440	448	anti-parallel
Strand 6	D	371	375	parallel
Strand 7	D	453	455	anti-parallel
Strand 8	D	356	363	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	985	987	first strand
Strand 2	D	351	353	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1068	1070	first strand
Strand 2	C	1055	1058	anti-parallel
Strand 3	D	10	12	anti-parallel
Strand 4	F	1214	1215	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	34	35	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	91	92	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	244	249	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	184	186	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	267	268	anti-parallel
Strand 3	G	293	294	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	534	first strand
Strand 2	D	555	558	parallel
Strand 3	D	600	607	anti-parallel
Strand 4	D	590	595	anti-parallel
Strand 5	D	582	586	anti-parallel
Strand 6	D	574	577	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	565	first strand
Strand 2	F	10	12	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	229	first strand
Strand 2	F	287	289	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	234	first strand
Strand 2	F	237	240	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	256	first strand
Strand 2	F	263	265	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	358	first strand
Strand 2	F	423	429	anti-parallel
Strand 3	F	409	411	anti-parallel
Strand 4	F	382	386	anti-parallel
Strand 5	F	373	376	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	441	446	first strand
Strand 2	F	977	983	anti-parallel
Strand 3	F	963	964	anti-parallel
Strand 4	F	470	476	anti-parallel
Strand 5	F	459	464	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	903	906	first strand
Strand 2	F	947	957	anti-parallel
Strand 3	F	938	944	anti-parallel
Strand 4	F	921	922	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	903	906	first strand
Strand 2	F	947	957	anti-parallel
Strand 3	F	479	484	anti-parallel
Strand 4	F	451	456	anti-parallel
Strand 5	F	971	972	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	486	489	first strand
Strand 2	F	894	898	anti-parallel
Strand 3	F	880	883	anti-parallel
Strand 4	F	503	504	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	495	496	first strand
Strand 2	F	509	516	anti-parallel
Strand 3	F	868	875	anti-parallel
Strand 4	F	850	855	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	834	837	first strand
Strand 2	F	536	540	anti-parallel
Strand 3	F	521	525	anti-parallel
Strand 4	F	862	863	anti-parallel

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There are 8 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	556	first strand
Strand 2	F	559	565	anti-parallel
Strand 3	F	571	574	anti-parallel
Strand 4	F	587	591	anti-parallel
Strand 5	F	795	803	anti-parallel
Strand 6	F	770	778	anti-parallel
Strand 7	F	623	627	anti-parallel
Strand 8	F	610	611	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	581	582	first strand
Strand 2	F	812	818	anti-parallel
Strand 3	F	826	831	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	746	750	first strand
Strand 2	F	629	635	anti-parallel
Strand 3	F	602	607	anti-parallel
Strand 4	F	785	786	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	637	644	first strand
Strand 2	F	682	689	anti-parallel
Strand 3	F	673	678	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	692	695	first strand
Strand 2	F	737	744	anti-parallel
Strand 3	F	727	734	anti-parallel
Strand 4	F	709	711	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	716	718	first strand
Strand 2	F	721	722	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	927	929	first strand
Strand 2	F	932	933	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1031	1032	first strand
Strand 2	F	1044	1045	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1152	1154	first strand
Strand 2	F	1136	1141	anti-parallel
Strand 3	F	1174	1178	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVS