Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVT entry

There are 8 chains in PDB entry 9DVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	T 10	T 45
2	A 61	A 96
A	THR 239	GLY 300
R	MET 1	LEU 52
R	LEU 54	GLN 244
S	MET 1	LEU 52
S	LEU 54	HIS 241
G	VAL 322	ILE 398

There are 30 helices in PDB entry 9DVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	250	Right-handed 310
Helix 2	AA2	A	252	262	Right-handed alpha
Helix 3	AA3	A	266	272	Right-handed alpha
Helix 4	AA4	A	274	281	Right-handed alpha
Helix 5	AA5	A	285	299	Right-handed alpha
Helix 6	AA6	R	11	25	Right-handed alpha
Helix 7	AA7	R	34	46	Right-handed alpha
Helix 8	AA8	R	60	71	Right-handed alpha
Helix 9	AA9	R	87	95	Right-handed alpha
Helix 10	AB1	R	108	124	Right-handed alpha
Helix 11	AB2	R	145	147	Right-handed 310
Helix 12	AB3	R	160	173	Right-handed alpha
Helix 13	AB4	R	179	187	Right-handed alpha
Helix 14	AB5	R	196	211	Right-handed alpha
Helix 15	AB6	R	234	241	Right-handed 310
Helix 16	AB7	S	11	25	Right-handed alpha
Helix 17	AB8	S	34	46	Right-handed alpha
Helix 18	AB9	S	60	71	Right-handed alpha
Helix 19	AC1	S	87	98	Right-handed alpha
Helix 20	AC2	S	108	124	Right-handed alpha
Helix 21	AC3	S	145	147	Right-handed 310
Helix 22	AC4	S	160	173	Right-handed alpha
Helix 23	AC5	S	179	187	Right-handed alpha
Helix 24	AC6	S	196	211	Right-handed alpha
Helix 25	AC7	S	234	241	Right-handed 310
Helix 26	AC8	G	324	338	Right-handed alpha
Helix 27	AC9	G	339	351	Right-handed alpha
Helix 28	AD1	G	359	367	Right-handed alpha
Helix 29	AD2	G	373	386	Right-handed alpha
Helix 30	AD3	G	392	398	Right-handed 310

There are 6 sheets in PDB entry 9DVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	28	32	first strand
Strand 2	R	4	8	parallel
Strand 3	R	49	53	parallel
Strand 4	R	79	83	parallel
Strand 5	R	101	104	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	137	138	first strand
Strand 2	R	141	144	anti-parallel
Strand 3	R	149	152	anti-parallel
Strand 4	R	155	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	178	first strand
Strand 2	R	227	230	anti-parallel
Strand 3	R	220	223	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	28	32	first strand
Strand 2	S	4	8	parallel
Strand 3	S	49	52	parallel
Strand 4	S	79	83	parallel
Strand 5	S	101	104	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	137	138	first strand
Strand 2	S	141	144	anti-parallel
Strand 3	S	149	152	anti-parallel
Strand 4	S	155	158	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	177	178	first strand
Strand 2	S	227	230	anti-parallel
Strand 3	S	220	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVT