Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DVY entry

There are 7 chains in PDB entry 9DVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 165	ALA 605
B	PRO 165	ALA 605
C	PRO 165	ALA 605
D	PRO 165	ALA 605
E	GLN 163	ILE 603
F	PRO 165	ALA 605
G	UNK 3	UNK 14

There are111 helices in PDB entry 9DVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	177	Right-handed alpha
Helix 2	AA2	A	183	200	Right-handed alpha
Helix 3	AA3	A	298	307	Right-handed alpha
Helix 4	AA4	A	308	310	Right-handed 310
Helix 5	AA5	A	333	342	Right-handed alpha
Helix 6	AA6	A	346	351	Right-handed alpha
Helix 7	AA7	A	359	364	Right-handed 310
Helix 8	AA8	A	376	389	Right-handed alpha
Helix 9	AA9	A	425	435	Right-handed alpha
Helix 10	AB1	A	469	480	Right-handed alpha
Helix 11	AB2	A	483	491	Right-handed alpha
Helix 12	AB3	A	493	499	Right-handed alpha
Helix 13	AB4	A	510	520	Right-handed alpha
Helix 14	AB5	A	524	535	Right-handed alpha
Helix 15	AB6	A	543	557	Right-handed alpha
Helix 16	AB7	A	559	561	Right-handed 310
Helix 17	AB8	A	562	572	Right-handed alpha
Helix 18	AB9	A	572	579	Right-handed alpha
Helix 19	AC1	A	590	595	Right-handed alpha
Helix 20	AC2	B	168	177	Right-handed alpha
Helix 21	AC3	B	183	205	Right-handed alpha
Helix 22	AC4	B	298	310	Right-handed alpha
Helix 23	AC5	B	333	343	Right-handed alpha
Helix 24	AC6	B	346	351	Right-handed alpha
Helix 25	AC7	B	359	364	Right-handed 310
Helix 26	AC8	B	377	389	Right-handed alpha
Helix 27	AC9	B	413	415	Right-handed 310
Helix 28	AD1	B	426	434	Right-handed alpha
Helix 29	AD2	B	467	480	Right-handed alpha
Helix 30	AD3	B	483	491	Right-handed alpha
Helix 31	AD4	B	493	498	Right-handed alpha
Helix 32	AD5	B	510	520	Right-handed alpha
Helix 33	AD6	B	524	536	Right-handed alpha
Helix 34	AD7	B	543	556	Right-handed alpha
Helix 35	AD8	B	557	558	Right-handed 310
Helix 36	AD9	B	559	562	Right-handed 310
Helix 37	AE1	B	563	572	Right-handed alpha
Helix 38	AE2	B	572	579	Right-handed alpha
Helix 39	AE3	B	590	595	Right-handed alpha
Helix 40	AE4	C	168	177	Right-handed alpha
Helix 41	AE5	C	183	205	Right-handed alpha
Helix 42	AE6	C	298	308	Right-handed alpha
Helix 43	AE7	C	320	322	Right-handed 310
Helix 44	AE8	C	333	343	Right-handed alpha
Helix 45	AE9	C	346	351	Right-handed alpha
Helix 46	AF1	C	359	364	Right-handed 310
Helix 47	AF2	C	377	389	Right-handed alpha
Helix 48	AF3	C	426	434	Right-handed alpha
Helix 49	AF4	C	467	480	Right-handed alpha
Helix 50	AF5	C	483	491	Right-handed alpha
Helix 51	AF6	C	493	499	Right-handed alpha
Helix 52	AF7	C	510	520	Right-handed alpha
Helix 53	AF8	C	524	536	Right-handed alpha
Helix 54	AF9	C	543	556	Right-handed alpha
Helix 55	AG1	C	557	558	Right-handed 310
Helix 56	AG2	C	559	560	Right-handed 310
Helix 57	AG3	C	561	572	Right-handed alpha
Helix 58	AG4	C	572	579	Right-handed alpha
Helix 59	AG5	C	590	595	Right-handed alpha
Helix 60	AG6	D	168	177	Right-handed alpha
Helix 61	AG7	D	183	205	Right-handed alpha
Helix 62	AG8	D	298	308	Right-handed alpha
Helix 63	AG9	D	333	343	Right-handed alpha
Helix 64	AH1	D	346	351	Right-handed alpha
Helix 65	AH2	D	359	364	Right-handed 310
Helix 66	AH3	D	377	390	Right-handed alpha
Helix 67	AH4	D	425	436	Right-handed alpha
Helix 68	AH5	D	470	480	Right-handed alpha
Helix 69	AH6	D	483	491	Right-handed alpha
Helix 70	AH7	D	493	498	Right-handed alpha
Helix 71	AH8	D	510	520	Right-handed alpha
Helix 72	AH9	D	524	535	Right-handed alpha
Helix 73	AI1	D	543	556	Right-handed alpha
Helix 74	AI2	D	557	558	Right-handed 310
Helix 75	AI3	D	559	561	Right-handed 310
Helix 76	AI4	D	562	572	Right-handed alpha
Helix 77	AI5	D	572	579	Right-handed alpha
Helix 78	AI6	D	590	595	Right-handed alpha
Helix 79	AI7	E	168	177	Right-handed alpha
Helix 80	AI8	E	183	202	Right-handed alpha
Helix 81	AI9	E	271	277	Right-handed 310
Helix 82	AJ1	E	298	309	Right-handed alpha
Helix 83	AJ2	E	333	343	Right-handed alpha
Helix 84	AJ3	E	346	351	Right-handed alpha
Helix 85	AJ4	E	359	364	Right-handed 310
Helix 86	AJ5	E	376	389	Right-handed alpha
Helix 87	AJ6	E	413	415	Right-handed 310
Helix 88	AJ7	E	425	434	Right-handed alpha
Helix 89	AJ8	E	472	480	Right-handed alpha
Helix 90	AJ9	E	483	491	Right-handed alpha
Helix 91	AK1	E	493	498	Right-handed alpha
Helix 92	AK2	E	510	520	Right-handed alpha
Helix 93	AK3	E	524	531	Right-handed alpha
Helix 94	AK4	E	543	558	Right-handed alpha
Helix 95	AK5	E	560	562	Right-handed 310
Helix 96	AK6	E	563	572	Right-handed alpha
Helix 97	AK7	E	572	579	Right-handed alpha
Helix 98	AK8	E	590	595	Right-handed alpha
Helix 99	AK9	F	168	177	Right-handed alpha
Helix 100	AL1	F	183	205	Right-handed alpha
Helix 101	AL2	F	298	307	Right-handed alpha
Helix 102	AL3	F	378	389	Right-handed alpha
Helix 103	AL4	F	476	480	Right-handed alpha
Helix 104	AL5	F	483	490	Right-handed alpha
Helix 105	AL6	F	493	498	Right-handed alpha
Helix 106	AL7	F	513	518	Right-handed alpha
Helix 107	AL8	F	529	536	Right-handed alpha
Helix 108	AL9	F	543	558	Right-handed alpha
Helix 109	AM1	F	559	561	Right-handed 310
Helix 110	AM2	F	562	572	Right-handed alpha
Helix 111	AM3	F	572	579	Right-handed alpha

There are 18 sheets in PDB entry 9DVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	318	first strand
Strand 2	A	354	358	parallel
Strand 3	A	416	421	parallel
Strand 4	A	289	292	parallel
Strand 5	A	502	505	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	330	331	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	408	411	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	542	first strand
Strand 2	A	584	589	parallel
Strand 3	A	601	604	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	318	first strand
Strand 2	B	354	358	parallel
Strand 3	B	416	420	parallel
Strand 4	B	289	291	parallel
Strand 5	B	502	504	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	396	first strand
Strand 2	B	407	411	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	542	first strand
Strand 2	B	584	589	parallel
Strand 3	B	601	604	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	318	first strand
Strand 2	C	354	358	parallel
Strand 3	C	416	421	parallel
Strand 4	C	289	292	parallel
Strand 5	C	502	505	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	396	first strand
Strand 2	C	407	411	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	542	first strand
Strand 2	C	584	589	parallel
Strand 3	C	601	604	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	318	first strand
Strand 2	D	354	358	parallel
Strand 3	D	416	421	parallel
Strand 4	D	289	292	parallel
Strand 5	D	502	505	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	408	411	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	542	first strand
Strand 2	D	584	589	parallel
Strand 3	D	601	604	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	318	first strand
Strand 2	E	354	358	parallel
Strand 3	E	416	421	parallel
Strand 4	E	289	292	parallel
Strand 5	E	502	505	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	392	396	first strand
Strand 2	E	407	411	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	542	first strand
Strand 2	E	586	589	parallel
Strand 3	E	601	603	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	420	first strand
Strand 2	F	289	292	parallel
Strand 3	F	502	505	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	588	589	first strand
Strand 2	F	601	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DVY