Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DW1 entry

There are 7 chains in PDB entry 9DW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	TYR 73	PRO 249
I	LEU 58	PRO 249
J	LEU 58	PRO 249
K	ARG 71	HIS 247
L	ASP 74	PRO 248
M	ASP 74	PRO 248
N	ILE 59	PRO 249

There are 50 helices in PDB entry 9DW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	74	81	Right-handed alpha
Helix 2	AA2	H	92	110	Right-handed alpha
Helix 3	AA3	H	125	139	Right-handed alpha
Helix 4	AA4	H	152	161	Right-handed alpha
Helix 5	AA5	H	196	214	Right-handed alpha
Helix 6	AA6	H	216	224	Right-handed alpha
Helix 7	AA7	H	231	239	Right-handed alpha
Helix 8	AA8	I	74	81	Right-handed alpha
Helix 9	AA9	I	92	110	Right-handed alpha
Helix 10	AB1	I	125	139	Right-handed alpha
Helix 11	AB2	I	153	161	Right-handed alpha
Helix 12	AB3	I	196	214	Right-handed alpha
Helix 13	AB4	I	216	224	Right-handed alpha
Helix 14	AB5	I	231	239	Right-handed alpha
Helix 15	AB6	J	75	79	Right-handed alpha
Helix 16	AB7	J	80	82	Right-handed 310
Helix 17	AB8	J	92	110	Right-handed alpha
Helix 18	AB9	J	125	139	Right-handed alpha
Helix 19	AC1	J	153	162	Right-handed alpha
Helix 20	AC2	J	196	214	Right-handed alpha
Helix 21	AC3	J	216	224	Right-handed alpha
Helix 22	AC4	J	231	239	Right-handed alpha
Helix 23	AC5	K	72	81	Right-handed alpha
Helix 24	AC6	K	92	110	Right-handed alpha
Helix 25	AC7	K	125	139	Right-handed alpha
Helix 26	AC8	K	153	161	Right-handed alpha
Helix 27	AC9	K	196	214	Right-handed alpha
Helix 28	AD1	K	216	225	Right-handed alpha
Helix 29	AD2	K	231	239	Right-handed alpha
Helix 30	AD3	L	75	80	Right-handed alpha
Helix 31	AD4	L	92	110	Right-handed alpha
Helix 32	AD5	L	125	139	Right-handed alpha
Helix 33	AD6	L	153	162	Right-handed alpha
Helix 34	AD7	L	196	214	Right-handed alpha
Helix 35	AD8	L	216	224	Right-handed alpha
Helix 36	AD9	L	231	239	Right-handed alpha
Helix 37	AE1	M	75	81	Right-handed alpha
Helix 38	AE2	M	92	110	Right-handed alpha
Helix 39	AE3	M	125	139	Right-handed alpha
Helix 40	AE4	M	153	161	Right-handed alpha
Helix 41	AE5	M	196	214	Right-handed alpha
Helix 42	AE6	M	216	224	Right-handed alpha
Helix 43	AE7	M	231	239	Right-handed alpha
Helix 44	AE8	N	75	80	Right-handed alpha
Helix 45	AE9	N	92	110	Right-handed alpha
Helix 46	AF1	N	125	139	Right-handed alpha
Helix 47	AF2	N	153	161	Right-handed alpha
Helix 48	AF3	N	196	213	Right-handed alpha
Helix 49	AF4	N	216	224	Right-handed alpha
Helix 50	AF5	N	231	239	Right-handed alpha

There are 17 sheets in PDB entry 9DW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	115	121	parallel
Strand 3	H	143	151	parallel
Strand 4	H	174	175	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	115	121	parallel
Strand 3	H	143	151	parallel
Strand 4	H	167	169	parallel
Strand 5	H	243	244	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	88	first strand
Strand 2	I	115	121	parallel
Strand 3	I	143	152	parallel
Strand 4	I	174	176	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	88	first strand
Strand 2	I	115	121	parallel
Strand 3	I	143	152	parallel
Strand 4	I	167	169	parallel
Strand 5	I	243	244	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	64	first strand
Strand 2	J	71	74	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	88	first strand
Strand 2	J	115	121	parallel
Strand 3	J	143	152	parallel
Strand 4	J	174	176	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	88	first strand
Strand 2	J	115	121	parallel
Strand 3	J	143	152	parallel
Strand 4	J	167	169	parallel
Strand 5	J	243	244	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	88	first strand
Strand 2	K	115	121	parallel
Strand 3	K	143	152	parallel
Strand 4	K	174	176	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	88	first strand
Strand 2	K	115	121	parallel
Strand 3	K	143	152	parallel
Strand 4	K	167	169	parallel
Strand 5	K	243	244	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	88	first strand
Strand 2	L	115	121	parallel
Strand 3	L	143	152	parallel
Strand 4	L	174	176	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	88	first strand
Strand 2	L	115	121	parallel
Strand 3	L	143	152	parallel
Strand 4	L	167	169	parallel
Strand 5	L	243	244	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	88	first strand
Strand 2	M	115	121	parallel
Strand 3	M	143	152	parallel
Strand 4	M	174	176	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	88	first strand
Strand 2	M	115	121	parallel
Strand 3	M	143	152	parallel
Strand 4	M	167	169	parallel
Strand 5	M	243	244	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	63	first strand
Strand 2	N	72	74	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	84	88	first strand
Strand 2	N	115	120	parallel
Strand 3	N	143	145	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	150	152	first strand
Strand 2	N	174	176	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	168	169	first strand
Strand 2	N	243	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW1