Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DW3 entry

There are 14 chains in PDB entry 9DW3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 59	PRO 248
B	ILE 59	PRO 248
C	ILE 59	PRO 248
D	ILE 59	PRO 248
E	ILE 59	PRO 248
F	ILE 59	PRO 248
G	ILE 59	PRO 248
H	ILE 59	PRO 248
I	ILE 59	PRO 248
J	ILE 59	PRO 248
K	ILE 59	PRO 248
L	ILE 59	PRO 248
M	ILE 59	PRO 248
N	ILE 59	PRO 248

There are 98 helices in PDB entry 9DW3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	81	Right-handed alpha
Helix 2	AA2	A	92	110	Right-handed alpha
Helix 3	AA3	A	125	139	Right-handed alpha
Helix 4	AA4	A	153	161	Right-handed alpha
Helix 5	AA5	A	188	214	Right-handed alpha
Helix 6	AA6	A	216	225	Right-handed alpha
Helix 7	AA7	A	231	239	Right-handed alpha
Helix 8	AA8	B	74	81	Right-handed alpha
Helix 9	AA9	B	92	110	Right-handed alpha
Helix 10	AB1	B	125	139	Right-handed alpha
Helix 11	AB2	B	153	161	Right-handed alpha
Helix 12	AB3	B	188	214	Right-handed alpha
Helix 13	AB4	B	216	225	Right-handed alpha
Helix 14	AB5	B	231	239	Right-handed alpha
Helix 15	AB6	C	74	81	Right-handed alpha
Helix 16	AB7	C	92	110	Right-handed alpha
Helix 17	AB8	C	125	139	Right-handed alpha
Helix 18	AB9	C	153	161	Right-handed alpha
Helix 19	AC1	C	188	214	Right-handed alpha
Helix 20	AC2	C	216	225	Right-handed alpha
Helix 21	AC3	C	231	239	Right-handed alpha
Helix 22	AC4	D	74	81	Right-handed alpha
Helix 23	AC5	D	92	110	Right-handed alpha
Helix 24	AC6	D	125	139	Right-handed alpha
Helix 25	AC7	D	153	161	Right-handed alpha
Helix 26	AC8	D	188	214	Right-handed alpha
Helix 27	AC9	D	216	225	Right-handed alpha
Helix 28	AD1	D	231	239	Right-handed alpha
Helix 29	AD2	E	74	81	Right-handed alpha
Helix 30	AD3	E	92	110	Right-handed alpha
Helix 31	AD4	E	125	139	Right-handed alpha
Helix 32	AD5	E	153	161	Right-handed alpha
Helix 33	AD6	E	188	214	Right-handed alpha
Helix 34	AD7	E	216	225	Right-handed alpha
Helix 35	AD8	E	231	239	Right-handed alpha
Helix 36	AD9	F	74	81	Right-handed alpha
Helix 37	AE1	F	92	110	Right-handed alpha
Helix 38	AE2	F	125	139	Right-handed alpha
Helix 39	AE3	F	153	161	Right-handed alpha
Helix 40	AE4	F	188	214	Right-handed alpha
Helix 41	AE5	F	216	225	Right-handed alpha
Helix 42	AE6	F	231	239	Right-handed alpha
Helix 43	AE7	G	74	81	Right-handed alpha
Helix 44	AE8	G	92	110	Right-handed alpha
Helix 45	AE9	G	125	139	Right-handed alpha
Helix 46	AF1	G	153	161	Right-handed alpha
Helix 47	AF2	G	188	214	Right-handed alpha
Helix 48	AF3	G	216	225	Right-handed alpha
Helix 49	AF4	G	231	239	Right-handed alpha
Helix 50	AF5	H	74	81	Right-handed alpha
Helix 51	AF6	H	92	110	Right-handed alpha
Helix 52	AF7	H	125	139	Right-handed alpha
Helix 53	AF8	H	153	161	Right-handed alpha
Helix 54	AF9	H	188	214	Right-handed alpha
Helix 55	AG1	H	216	225	Right-handed alpha
Helix 56	AG2	H	231	239	Right-handed alpha
Helix 57	AG3	I	74	81	Right-handed alpha
Helix 58	AG4	I	92	110	Right-handed alpha
Helix 59	AG5	I	125	139	Right-handed alpha
Helix 60	AG6	I	153	161	Right-handed alpha
Helix 61	AG7	I	188	214	Right-handed alpha
Helix 62	AG8	I	216	225	Right-handed alpha
Helix 63	AG9	I	231	239	Right-handed alpha
Helix 64	AH1	J	74	81	Right-handed alpha
Helix 65	AH2	J	92	110	Right-handed alpha
Helix 66	AH3	J	125	139	Right-handed alpha
Helix 67	AH4	J	153	161	Right-handed alpha
Helix 68	AH5	J	188	214	Right-handed alpha
Helix 69	AH6	J	216	225	Right-handed alpha
Helix 70	AH7	J	231	239	Right-handed alpha
Helix 71	AH8	K	74	81	Right-handed alpha
Helix 72	AH9	K	92	110	Right-handed alpha
Helix 73	AI1	K	125	139	Right-handed alpha
Helix 74	AI2	K	153	161	Right-handed alpha
Helix 75	AI3	K	188	214	Right-handed alpha
Helix 76	AI4	K	216	225	Right-handed alpha
Helix 77	AI5	K	231	239	Right-handed alpha
Helix 78	AI6	L	74	81	Right-handed alpha
Helix 79	AI7	L	92	110	Right-handed alpha
Helix 80	AI8	L	125	139	Right-handed alpha
Helix 81	AI9	L	153	161	Right-handed alpha
Helix 82	AJ1	L	188	214	Right-handed alpha
Helix 83	AJ2	L	216	225	Right-handed alpha
Helix 84	AJ3	L	231	239	Right-handed alpha
Helix 85	AJ4	M	74	81	Right-handed alpha
Helix 86	AJ5	M	92	110	Right-handed alpha
Helix 87	AJ6	M	125	139	Right-handed alpha
Helix 88	AJ7	M	153	161	Right-handed alpha
Helix 89	AJ8	M	188	214	Right-handed alpha
Helix 90	AJ9	M	216	225	Right-handed alpha
Helix 91	AK1	M	231	239	Right-handed alpha
Helix 92	AK2	N	74	81	Right-handed alpha
Helix 93	AK3	N	92	110	Right-handed alpha
Helix 94	AK4	N	125	139	Right-handed alpha
Helix 95	AK5	N	153	161	Right-handed alpha
Helix 96	AK6	N	188	214	Right-handed alpha
Helix 97	AK7	N	216	225	Right-handed alpha
Helix 98	AK8	N	231	239	Right-handed alpha

There are 35 sheets in PDB entry 9DW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	115	121	parallel
Strand 3	A	143	152	parallel
Strand 4	A	174	177	parallel
Strand 5	A	228	230	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	115	121	parallel
Strand 3	A	143	152	parallel
Strand 4	A	167	169	parallel
Strand 5	A	243	244	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	187	first strand
Strand 2	K	181	187	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	115	121	parallel
Strand 3	B	143	152	parallel
Strand 4	B	174	177	parallel
Strand 5	B	228	230	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	88	first strand
Strand 2	B	115	121	parallel
Strand 3	B	143	152	parallel
Strand 4	B	167	169	parallel
Strand 5	B	243	244	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	187	first strand
Strand 2	N	181	187	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	115	121	parallel
Strand 3	C	143	152	parallel
Strand 4	C	174	177	parallel
Strand 5	C	228	230	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	115	121	parallel
Strand 3	C	143	152	parallel
Strand 4	C	167	169	parallel
Strand 5	C	243	244	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	187	first strand
Strand 2	J	181	187	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	115	121	parallel
Strand 3	D	143	152	parallel
Strand 4	D	174	177	parallel
Strand 5	D	228	230	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	88	first strand
Strand 2	D	115	121	parallel
Strand 3	D	143	152	parallel
Strand 4	D	167	169	parallel
Strand 5	D	243	244	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	187	first strand
Strand 2	I	181	187	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	115	121	parallel
Strand 3	E	143	152	parallel
Strand 4	E	174	177	parallel
Strand 5	E	228	230	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	115	121	parallel
Strand 3	E	143	152	parallel
Strand 4	E	167	169	parallel
Strand 5	E	243	244	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	187	first strand
Strand 2	H	181	187	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	115	121	parallel
Strand 3	F	143	152	parallel
Strand 4	F	174	177	parallel
Strand 5	F	228	230	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	115	121	parallel
Strand 3	F	143	152	parallel
Strand 4	F	167	169	parallel
Strand 5	F	243	244	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	187	first strand
Strand 2	M	181	187	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	115	121	parallel
Strand 3	G	143	152	parallel
Strand 4	G	174	177	parallel
Strand 5	G	228	230	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	115	121	parallel
Strand 3	G	143	152	parallel
Strand 4	G	167	169	parallel
Strand 5	G	243	244	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	187	first strand
Strand 2	L	181	187	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	115	121	parallel
Strand 3	H	143	152	parallel
Strand 4	H	174	177	parallel
Strand 5	H	228	230	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	115	121	parallel
Strand 3	H	143	152	parallel
Strand 4	H	167	169	parallel
Strand 5	H	243	244	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	88	first strand
Strand 2	I	115	121	parallel
Strand 3	I	143	152	parallel
Strand 4	I	174	177	parallel
Strand 5	I	228	230	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	88	first strand
Strand 2	I	115	121	parallel
Strand 3	I	143	152	parallel
Strand 4	I	167	169	parallel
Strand 5	I	243	244	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	88	first strand
Strand 2	J	115	121	parallel
Strand 3	J	143	152	parallel
Strand 4	J	174	177	parallel
Strand 5	J	228	230	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	88	first strand
Strand 2	J	115	121	parallel
Strand 3	J	143	152	parallel
Strand 4	J	167	169	parallel
Strand 5	J	243	244	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	88	first strand
Strand 2	K	115	121	parallel
Strand 3	K	143	152	parallel
Strand 4	K	174	177	parallel
Strand 5	K	228	230	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	88	first strand
Strand 2	K	115	121	parallel
Strand 3	K	143	152	parallel
Strand 4	K	167	169	parallel
Strand 5	K	243	244	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	88	first strand
Strand 2	L	115	121	parallel
Strand 3	L	143	152	parallel
Strand 4	L	174	177	parallel
Strand 5	L	228	230	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	88	first strand
Strand 2	L	115	121	parallel
Strand 3	L	143	152	parallel
Strand 4	L	167	169	parallel
Strand 5	L	243	244	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	88	first strand
Strand 2	M	115	121	parallel
Strand 3	M	143	152	parallel
Strand 4	M	174	177	parallel
Strand 5	M	228	230	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	88	first strand
Strand 2	M	115	121	parallel
Strand 3	M	143	152	parallel
Strand 4	M	167	169	parallel
Strand 5	M	243	244	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	84	88	first strand
Strand 2	N	115	121	parallel
Strand 3	N	143	152	parallel
Strand 4	N	174	177	parallel
Strand 5	N	228	230	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	84	88	first strand
Strand 2	N	115	121	parallel
Strand 3	N	143	152	parallel
Strand 4	N	167	169	parallel
Strand 5	N	243	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DW3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW3