Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DW4 entry

There are 3 chains in PDB entry 9DW4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 GLN 13PHE 351
A
 ARG 3LEU 1436
B
 UNK 1UNK 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9DW4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
14 32Right-handed alpha
Helix 2
AA2
K
77 83Right-handed alpha
Helix 3
AA3
K
86 99Right-handed alpha
Helix 4
AA4
K
128 137Right-handed alpha
Helix 5
AA5
K
140 160Right-handed alpha
Helix 6
AA6
K
169 171Right-handed 310
Helix 7
AA7
K
202 206Right-handed 310
Helix 8
AA8
K
207 212Right-handed alpha
Helix 9
AA9
K
219 235Right-handed alpha
Helix 10
AB1
K
243 254Right-handed alpha
Helix 11
AB2
K
263 274Right-handed alpha
Helix 12
AB3
K
289 294Right-handed alpha
Helix 13
AB4
K
295 299Right-handed 310
Helix 14
AB5
K
304 308Right-handed 310
Helix 15
AB6
A
10 17Right-handed alpha
Helix 16
AB7
A
20 30Right-handed alpha
Helix 17
AB8
A
33 37Right-handed 310
Helix 18
AB9
A
45 64Right-handed alpha
Helix 19
AC1
A
68 106Right-handed alpha
Helix 20
AC2
A
107 108Right-handed 310
Helix 21
AC3
A
118 118Right-handed 310
Helix 22
AC4
A
119 165Right-handed alpha
Helix 23
AC5
A
168 173Right-handed alpha
Helix 24
AC6
A
176 187Right-handed alpha
Helix 25
AC7
A
189 194Right-handed alpha
Helix 26
AC8
A
199 219Right-handed alpha
Helix 27
AC9
A
223 268Right-handed alpha
Helix 28
AD1
A
268 276Right-handed alpha
Helix 29
AD2
A
277 329Right-handed alpha
Helix 30
AD3
A
332 376Right-handed alpha
Helix 31
AD4
A
463 473Right-handed alpha
Helix 32
AD5
A
501 508Right-handed alpha
Helix 33
AD6
A
513 524Right-handed alpha
Helix 34
AD7
A
525 533Right-handed alpha
Helix 35
AD8
A
549 564Right-handed alpha
Helix 36
AD9
A
574 578Right-handed 310
Helix 37
AE1
A
579 590Right-handed alpha
Helix 38
AE2
A
594 598Right-handed 310
Helix 39
AE3
A
606 613Right-handed alpha
Helix 40
AE4
A
630 637Right-handed alpha
Helix 41
AE5
A
637 645Right-handed alpha
Helix 42
AE6
A
845 854Right-handed alpha
Helix 43
AE7
A
856 886Right-handed alpha
Helix 44
AE8
A
911 916Right-handed alpha
Helix 45
AE9
A
916 922Right-handed alpha
Helix 46
AF1
A
922 927Right-handed alpha
Helix 47
AF2
A
930 959Right-handed alpha
Helix 48
AF3
A
960 967Right-handed alpha
Helix 49
AF4
A
968 978Right-handed alpha
Helix 50
AF5
A
978 985Right-handed alpha
Helix 51
AF6
A
985 1012Right-handed alpha
Helix 52
AF7
A
1014 1069Right-handed alpha
Helix 53
AF8
A
1070 1121Right-handed alpha
Helix 54
AF9
A
1126 1168Right-handed alpha
Helix 55
AG1
A
1250 1258Right-handed alpha
Helix 56
AG2
A
1278 1283Right-handed alpha
Helix 57
AG3
A
1284 1286Right-handed 310
Helix 58
AG4
A
1299 1305Right-handed alpha
Helix 59
AG5
A
1311 1322Right-handed alpha
Helix 60
AG6
A
1324 1330Right-handed alpha
Helix 61
AG7
A
1339 1344Right-handed alpha
Helix 62
AG8
A
1347 1363Right-handed alpha
Helix 63
AG9
A
1371 1376Right-handed alpha
Helix 64
AH1
A
1377 1391Right-handed alpha
Helix 65
AH2
A
1392 1395Right-handed 310
Helix 66
AH3
A
1405 1410Right-handed 310
Helix 67
AH4
A
1426 1434Right-handed alpha
Helix 68
AH5
B
9 15Right-handed alpha
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There are 7 sheets in PDB entry 9DW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
48 51first strand
Strand 2
K
57 62anti-parallel
Strand 3
K
69 76anti-parallel
Strand 4
K
116 122anti-parallel
Strand 5
K
107 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
173 175first strand
Strand 2
K
181 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
479 483anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
600 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 620parallel
Strand 6
A
623 629anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1240 1244first strand
Strand 2
A
1412 1416parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1366 1370first strand
Strand 2
A
1396 1400parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il