Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DW5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9DW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 1436
G
 GLN 13TRP 197
G
 LEU 199PHE 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 9DW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
20 30Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
41 44Right-handed 310
Helix 5
AA5
A
45 64Right-handed alpha
Helix 6
AA6
A
69 98Right-handed alpha
Helix 7
AA7
A
98 106Right-handed alpha
Helix 8
AA8
A
107 108Right-handed 310
Helix 9
AA9
A
118 118Right-handed 310
Helix 10
AB1
A
119 165Right-handed alpha
Helix 11
AB2
A
168 173Right-handed alpha
Helix 12
AB3
A
176 187Right-handed alpha
Helix 13
AB4
A
189 194Right-handed alpha
Helix 14
AB5
A
199 220Right-handed alpha
Helix 15
AB6
A
223 268Right-handed alpha
Helix 16
AB7
A
268 276Right-handed alpha
Helix 17
AB8
A
277 329Right-handed alpha
Helix 18
AB9
A
333 352Right-handed alpha
Helix 19
AC1
A
352 375Right-handed alpha
Helix 20
AC2
A
463 472Right-handed alpha
Helix 21
AC3
A
502 508Right-handed alpha
Helix 22
AC4
A
513 524Right-handed alpha
Helix 23
AC5
A
525 533Right-handed alpha
Helix 24
AC6
A
549 564Right-handed alpha
Helix 25
AC7
A
573 578Right-handed 310
Helix 26
AC8
A
579 590Right-handed alpha
Helix 27
AC9
A
606 612Right-handed alpha
Helix 28
AD1
A
629 637Right-handed alpha
Helix 29
AD2
A
637 645Right-handed alpha
Helix 30
AD3
A
845 854Right-handed alpha
Helix 31
AD4
A
856 886Right-handed alpha
Helix 32
AD5
A
911 916Right-handed alpha
Helix 33
AD6
A
916 922Right-handed alpha
Helix 34
AD7
A
922 927Right-handed alpha
Helix 35
AD8
A
930 957Right-handed alpha
Helix 36
AD9
A
960 967Right-handed alpha
Helix 37
AE1
A
969 978Right-handed alpha
Helix 38
AE2
A
978 985Right-handed alpha
Helix 39
AE3
A
985 1012Right-handed alpha
Helix 40
AE4
A
1015 1047Right-handed alpha
Helix 41
AE5
A
1048 1069Right-handed alpha
Helix 42
AE6
A
1070 1121Right-handed alpha
Helix 43
AE7
A
1126 1168Right-handed alpha
Helix 44
AE8
A
1250 1258Right-handed alpha
Helix 45
AE9
A
1278 1285Right-handed alpha
Helix 46
AF1
A
1299 1305Right-handed alpha
Helix 47
AF2
A
1311 1322Right-handed alpha
Helix 48
AF3
A
1324 1330Right-handed alpha
Helix 49
AF4
A
1339 1344Right-handed alpha
Helix 50
AF5
A
1347 1363Right-handed alpha
Helix 51
AF6
A
1371 1376Right-handed alpha
Helix 52
AF7
A
1377 1391Right-handed alpha
Helix 53
AF8
A
1403 1408Right-handed alpha
Helix 54
AF9
A
1426 1431Right-handed alpha
Helix 55
AG1
G
14 33Right-handed alpha
Helix 56
AG2
G
77 83Right-handed alpha
Helix 57
AG3
G
86 99Right-handed alpha
Helix 58
AG4
G
128 137Right-handed alpha
Helix 59
AG5
G
140 161Right-handed alpha
Helix 60
AG6
G
169 171Right-handed 310
Helix 61
AG7
G
207 212Right-handed alpha
Helix 62
AG8
G
219 235Right-handed alpha
Helix 63
AG9
G
243 254Right-handed alpha
Helix 64
AH1
G
263 274Right-handed alpha
Helix 65
AH2
G
289 294Right-handed alpha
Helix 66
AH3
G
295 299Right-handed 310
Helix 67
AH4
G
302 309Right-handed alpha
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There are 8 sheets in PDB entry 9DW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 397first strand
Strand 2
A
444 448anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 603first strand
Strand 2
A
453 457parallel
Strand 3
A
615 620parallel
Strand 4
A
623 628anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1269anti-parallel
Strand 4
A
1272 1273anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1240 1242first strand
Strand 2
A
1412 1414parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1369parallel
Strand 3
A
1396 1397parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
48 51first strand
Strand 2
G
57 62anti-parallel
Strand 3
G
69 76anti-parallel
Strand 4
G
116 122anti-parallel
Strand 5
G
107 112anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
173 175first strand
Strand 2
G
181 183anti-parallel
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