Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DW8 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9DW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 1451
G	SER 15	TRP 197
G	LEU 199	ASP 329

There are 73 helices in PDB entry 9DW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	20	29	Right-handed alpha
Helix 4	AA4	A	33	37	Right-handed 310
Helix 5	AA5	A	41	45	Right-handed 310
Helix 6	AA6	A	46	64	Right-handed alpha
Helix 7	AA7	A	73	97	Right-handed alpha
Helix 8	AA8	A	97	106	Right-handed alpha
Helix 9	AA9	A	107	109	Right-handed 310
Helix 10	AB1	A	113	119	Right-handed alpha
Helix 11	AB2	A	119	165	Right-handed alpha
Helix 12	AB3	A	168	173	Right-handed alpha
Helix 13	AB4	A	176	186	Right-handed alpha
Helix 14	AB5	A	189	194	Right-handed alpha
Helix 15	AB6	A	195	198	Right-handed 310
Helix 16	AB7	A	199	220	Right-handed alpha
Helix 17	AB8	A	223	268	Right-handed alpha
Helix 18	AB9	A	268	276	Right-handed alpha
Helix 19	AC1	A	279	308	Right-handed alpha
Helix 20	AC2	A	308	321	Right-handed alpha
Helix 21	AC3	A	322	329	Right-handed alpha
Helix 22	AC4	A	333	352	Right-handed alpha
Helix 23	AC5	A	353	375	Right-handed alpha
Helix 24	AC6	A	463	472	Right-handed alpha
Helix 25	AC7	A	502	508	Right-handed alpha
Helix 26	AC8	A	513	524	Right-handed alpha
Helix 27	AC9	A	526	531	Right-handed alpha
Helix 28	AD1	A	549	564	Right-handed alpha
Helix 29	AD2	A	579	590	Right-handed alpha
Helix 30	AD3	A	608	613	Right-handed alpha
Helix 31	AD4	A	629	635	Right-handed alpha
Helix 32	AD5	A	847	855	Right-handed alpha
Helix 33	AD6	A	856	883	Right-handed alpha
Helix 34	AD7	A	908	912	Right-handed 310
Helix 35	AD8	A	913	927	Right-handed alpha
Helix 36	AD9	A	930	959	Right-handed alpha
Helix 37	AE1	A	960	965	Right-handed alpha
Helix 38	AE2	A	968	985	Right-handed alpha
Helix 39	AE3	A	985	1012	Right-handed alpha
Helix 40	AE4	A	1014	1019	Right-handed alpha
Helix 41	AE5	A	1019	1047	Right-handed alpha
Helix 42	AE6	A	1048	1061	Right-handed alpha
Helix 43	AE7	A	1061	1069	Right-handed alpha
Helix 44	AE8	A	1070	1121	Right-handed alpha
Helix 45	AE9	A	1127	1139	Right-handed alpha
Helix 46	AF1	A	1139	1157	Right-handed alpha
Helix 47	AF2	A	1157	1168	Right-handed alpha
Helix 48	AF3	A	1249	1257	Right-handed alpha
Helix 49	AF4	A	1269	1272	Right-handed 310
Helix 50	AF5	A	1278	1283	Right-handed alpha
Helix 51	AF6	A	1300	1305	Right-handed alpha
Helix 52	AF7	A	1315	1320	Right-handed alpha
Helix 53	AF8	A	1324	1329	Right-handed alpha
Helix 54	AF9	A	1347	1362	Right-handed alpha
Helix 55	AG1	A	1377	1391	Right-handed alpha
Helix 56	AG2	A	1404	1409	Right-handed 310
Helix 57	AG3	A	1426	1433	Right-handed alpha
Helix 58	AG4	A	1434	1439	Right-handed alpha
Helix 59	AG5	A	1442	1450	Right-handed alpha
Helix 60	AG6	G	16	33	Right-handed alpha
Helix 61	AG7	G	77	83	Right-handed alpha
Helix 62	AG8	G	86	99	Right-handed alpha
Helix 63	AG9	G	128	137	Right-handed alpha
Helix 64	AH1	G	140	161	Right-handed alpha
Helix 65	AH2	G	169	171	Right-handed 310
Helix 66	AH3	G	202	206	Right-handed 310
Helix 67	AH4	G	207	212	Right-handed alpha
Helix 68	AH5	G	219	235	Right-handed alpha
Helix 69	AH6	G	243	254	Right-handed alpha
Helix 70	AH7	G	263	274	Right-handed alpha
Helix 71	AH8	G	289	294	Right-handed alpha
Helix 72	AH9	G	295	299	Right-handed 310
Helix 73	AI1	G	302	308	Right-handed alpha

There are 10 sheets in PDB entry 9DW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	905	906	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	449	first strand
Strand 2	A	391	399	anti-parallel
Strand 3	A	481	483	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	568	571	parallel
Strand 3	A	599	603	parallel
Strand 4	A	454	458	parallel
Strand 5	A	615	620	parallel
Strand 6	A	623	628	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	540	541	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1233	1234	first strand
Strand 2	A	1210	1217	anti-parallel
Strand 3	A	1263	1267	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1286	1289	first strand
Strand 2	A	1366	1370	parallel
Strand 3	A	1396	1400	parallel
Strand 4	A	1240	1244	parallel
Strand 5	A	1412	1417	parallel
Strand 6	A	1420	1424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1298	1299	first strand
Strand 2	A	1338	1339	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	58	62	anti-parallel
Strand 3	G	69	76	anti-parallel
Strand 4	G	116	122	anti-parallel
Strand 5	G	107	112	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	190	191	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	181	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW8