Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DW9 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9DW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 812
A	GLN 814	PRO 1451
G	GLN 13	TRP 197
G	LEU 199	PHE 351

There are 66 helices in PDB entry 9DW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	20	30	Right-handed alpha
Helix 4	AA4	A	33	37	Right-handed 310
Helix 5	AA5	A	41	44	Right-handed 310
Helix 6	AA6	A	45	64	Right-handed alpha
Helix 7	AA7	A	68	108	Right-handed alpha
Helix 8	AA8	A	113	118	Right-handed alpha
Helix 9	AA9	A	119	165	Right-handed alpha
Helix 10	AB1	A	168	173	Right-handed alpha
Helix 11	AB2	A	176	186	Right-handed alpha
Helix 12	AB3	A	189	198	Right-handed alpha
Helix 13	AB4	A	199	217	Right-handed alpha
Helix 14	AB5	A	222	268	Right-handed alpha
Helix 15	AB6	A	268	276	Right-handed alpha
Helix 16	AB7	A	277	308	Right-handed alpha
Helix 17	AB8	A	309	312	Right-handed 310
Helix 18	AB9	A	313	329	Right-handed alpha
Helix 19	AC1	A	333	352	Right-handed alpha
Helix 20	AC2	A	352	375	Right-handed alpha
Helix 21	AC3	A	463	472	Right-handed alpha
Helix 22	AC4	A	502	508	Right-handed alpha
Helix 23	AC5	A	513	524	Right-handed alpha
Helix 24	AC6	A	526	533	Right-handed alpha
Helix 25	AC7	A	535	538	Right-handed 310
Helix 26	AC8	A	549	564	Right-handed alpha
Helix 27	AC9	A	579	590	Right-handed alpha
Helix 28	AD1	A	606	612	Right-handed alpha
Helix 29	AD2	A	629	634	Right-handed alpha
Helix 30	AD3	A	825	830	Right-handed alpha
Helix 31	AD4	A	848	854	Right-handed alpha
Helix 32	AD5	A	856	884	Right-handed alpha
Helix 33	AD6	A	908	912	Right-handed 310
Helix 34	AD7	A	913	927	Right-handed alpha
Helix 35	AD8	A	930	958	Right-handed alpha
Helix 36	AD9	A	960	967	Right-handed alpha
Helix 37	AE1	A	968	1012	Right-handed alpha
Helix 38	AE2	A	1013	1047	Right-handed alpha
Helix 39	AE3	A	1048	1061	Right-handed alpha
Helix 40	AE4	A	1061	1069	Right-handed alpha
Helix 41	AE5	A	1070	1122	Right-handed alpha
Helix 42	AE6	A	1127	1168	Right-handed alpha
Helix 43	AE7	A	1249	1258	Right-handed alpha
Helix 44	AE8	A	1278	1284	Right-handed alpha
Helix 45	AE9	A	1300	1305	Right-handed alpha
Helix 46	AF1	A	1311	1323	Right-handed alpha
Helix 47	AF2	A	1324	1329	Right-handed alpha
Helix 48	AF3	A	1347	1362	Right-handed alpha
Helix 49	AF4	A	1377	1391	Right-handed alpha
Helix 50	AF5	A	1404	1410	Right-handed 310
Helix 51	AF6	A	1426	1434	Right-handed alpha
Helix 52	AF7	A	1434	1440	Right-handed alpha
Helix 53	AF8	A	1442	1450	Right-handed alpha
Helix 54	AF9	G	14	33	Right-handed alpha
Helix 55	AG1	G	77	83	Right-handed alpha
Helix 56	AG2	G	86	97	Right-handed alpha
Helix 57	AG3	G	128	137	Right-handed alpha
Helix 58	AG4	G	140	161	Right-handed alpha
Helix 59	AG5	G	169	171	Right-handed 310
Helix 60	AG6	G	202	206	Right-handed 310
Helix 61	AG7	G	207	212	Right-handed alpha
Helix 62	AG8	G	219	235	Right-handed alpha
Helix 63	AG9	G	243	254	Right-handed alpha
Helix 64	AH1	G	263	274	Right-handed alpha
Helix 65	AH2	G	295	299	Right-handed 310
Helix 66	AH3	G	302	309	Right-handed alpha

There are 10 sheets in PDB entry 9DW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	905	906	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	449	first strand
Strand 2	A	391	399	anti-parallel
Strand 3	A	479	483	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	568	572	parallel
Strand 3	A	599	603	parallel
Strand 4	A	453	458	parallel
Strand 5	A	615	620	parallel
Strand 6	A	623	628	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	540	541	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1234	first strand
Strand 2	A	1210	1218	anti-parallel
Strand 3	A	1262	1269	anti-parallel
Strand 4	A	1272	1273	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1286	1289	first strand
Strand 2	A	1366	1370	parallel
Strand 3	A	1396	1400	parallel
Strand 4	A	1239	1244	parallel
Strand 5	A	1412	1417	parallel
Strand 6	A	1420	1424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1298	1299	first strand
Strand 2	A	1338	1339	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	62	first strand
Strand 2	G	69	76	anti-parallel
Strand 3	G	116	122	anti-parallel
Strand 4	G	107	110	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	190	191	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	181	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DW9