Analysis of interatomic Contacts of Structural Units in PDB entry:
9DWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DWP entry

There is 1 chain in PDB entry 9DWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24PRO 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9DWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 56Right-handed alpha
Helix 2
AA2
A
74 83Right-handed alpha
Helix 3
AA3
A
91 95Right-handed 310
Helix 4
AA4
A
101 107Right-handed 310
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
131 132Right-handed 310
Helix 8
AA8
A
133 136Right-handed 310
Helix 9
AA9
A
159 164Right-handed 310
Helix 10
AB1
A
173 183Right-handed alpha
Helix 11
AB2
A
191 193Right-handed 310
Helix 12
AB3
A
194 201Right-handed alpha
Helix 13
AB4
A
210 217Right-handed alpha
Helix 14
AB5
A
218 223Right-handed 310
Helix 15
AB6
A
242 247Right-handed alpha
Helix 16
AB7
A
249 286Right-handed alpha
Helix 17
AB8
A
294 306Right-handed alpha
Helix 18
AB9
A
307 311Right-handed 310
Helix 19
AC1
A
312 317Right-handed alpha
Helix 20
AC2
A
317 327Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9DWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
60 65parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
225 241anti-parallel
Strand 3
A
138 153anti-parallel
Strand 4
A
207 209anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
225 241anti-parallel
Strand 3
A
289 292parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
186 189parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il