Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DX3 entry

There are 9 chains in PDB entry 9DX3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	PHE 328
B	ILE 23	PRO 332
C	ASP 20	PRO 333
D	ALA 22	PRO 332
E	ILE 23	PRO 332
F	ALA 22	PRO 332
G	ALA 22	PRO 332
H	ILE 23	ARG 195
I	GLN 36	LEU 181

There are125 helices in PDB entry 9DX3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	34	52	Right-handed alpha
Helix 3	AA3	A	68	79	Right-handed alpha
Helix 4	AA4	A	93	103	Right-handed alpha
Helix 5	AA5	A	115	118	Right-handed 310
Helix 6	AA6	A	119	133	Right-handed alpha
Helix 7	AA7	A	168	173	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	205	216	Right-handed alpha
Helix 10	AB1	A	219	237	Right-handed alpha
Helix 11	AB2	A	245	255	Right-handed alpha
Helix 12	AB3	A	262	274	Right-handed alpha
Helix 13	AB4	A	284	291	Right-handed alpha
Helix 14	AB5	A	293	300	Right-handed alpha
Helix 15	AB6	A	301	308	Right-handed alpha
Helix 16	AB7	A	321	328	Right-handed alpha
Helix 17	AB8	B	27	31	Right-handed 310
Helix 18	AB9	B	34	52	Right-handed alpha
Helix 19	AC1	B	67	80	Right-handed alpha
Helix 20	AC2	B	93	103	Right-handed alpha
Helix 21	AC3	B	115	118	Right-handed 310
Helix 22	AC4	B	119	133	Right-handed alpha
Helix 23	AC5	B	168	173	Right-handed alpha
Helix 24	AC6	B	185	201	Right-handed alpha
Helix 25	AC7	B	205	215	Right-handed alpha
Helix 26	AC8	B	219	236	Right-handed alpha
Helix 27	AC9	B	249	254	Right-handed alpha
Helix 28	AD1	B	262	270	Right-handed alpha
Helix 29	AD2	B	283	288	Right-handed alpha
Helix 30	AD3	B	293	300	Right-handed alpha
Helix 31	AD4	B	301	308	Right-handed alpha
Helix 32	AD5	B	321	329	Right-handed alpha
Helix 33	AD6	C	34	51	Right-handed alpha
Helix 34	AD7	C	67	79	Right-handed alpha
Helix 35	AD8	C	93	104	Right-handed alpha
Helix 36	AD9	C	115	118	Right-handed 310
Helix 37	AE1	C	119	132	Right-handed alpha
Helix 38	AE2	C	185	201	Right-handed alpha
Helix 39	AE3	C	205	215	Right-handed alpha
Helix 40	AE4	C	219	238	Right-handed alpha
Helix 41	AE5	C	243	254	Right-handed alpha
Helix 42	AE6	C	262	275	Right-handed alpha
Helix 43	AE7	C	285	290	Right-handed alpha
Helix 44	AE8	C	293	298	Right-handed 310
Helix 45	AE9	C	301	308	Right-handed alpha
Helix 46	AF1	C	321	328	Right-handed alpha
Helix 47	AF2	D	27	31	Right-handed 310
Helix 48	AF3	D	34	52	Right-handed alpha
Helix 49	AF4	D	67	79	Right-handed alpha
Helix 50	AF5	D	93	104	Right-handed alpha
Helix 51	AF6	D	122	133	Right-handed alpha
Helix 52	AF7	D	163	168	Right-handed 310
Helix 53	AF8	D	169	175	Right-handed alpha
Helix 54	AF9	D	185	201	Right-handed alpha
Helix 55	AG1	D	205	215	Right-handed alpha
Helix 56	AG2	D	219	237	Right-handed alpha
Helix 57	AG3	D	245	251	Right-handed alpha
Helix 58	AG4	D	262	275	Right-handed alpha
Helix 59	AG5	D	293	300	Right-handed alpha
Helix 60	AG6	D	301	308	Right-handed alpha
Helix 61	AG7	D	321	328	Right-handed alpha
Helix 62	AG8	E	27	31	Right-handed 310
Helix 63	AG9	E	34	51	Right-handed alpha
Helix 64	AH1	E	67	79	Right-handed alpha
Helix 65	AH2	E	93	103	Right-handed alpha
Helix 66	AH3	E	115	118	Right-handed 310
Helix 67	AH4	E	119	132	Right-handed alpha
Helix 68	AH5	E	164	169	Right-handed alpha
Helix 69	AH6	E	185	201	Right-handed alpha
Helix 70	AH7	E	205	215	Right-handed alpha
Helix 71	AH8	E	219	238	Right-handed alpha
Helix 72	AH9	E	243	254	Right-handed alpha
Helix 73	AI1	E	262	275	Right-handed alpha
Helix 74	AI2	E	287	291	Right-handed 310
Helix 75	AI3	E	293	300	Right-handed alpha
Helix 76	AI4	E	301	308	Right-handed alpha
Helix 77	AI5	E	321	329	Right-handed alpha
Helix 78	AI6	F	27	31	Right-handed 310
Helix 79	AI7	F	34	51	Right-handed alpha
Helix 80	AI8	F	67	79	Right-handed alpha
Helix 81	AI9	F	93	103	Right-handed alpha
Helix 82	AJ1	F	115	118	Right-handed 310
Helix 83	AJ2	F	119	133	Right-handed alpha
Helix 84	AJ3	F	168	173	Right-handed alpha
Helix 85	AJ4	F	185	201	Right-handed alpha
Helix 86	AJ5	F	205	215	Right-handed alpha
Helix 87	AJ6	F	219	237	Right-handed alpha
Helix 88	AJ7	F	244	253	Right-handed alpha
Helix 89	AJ8	F	262	275	Right-handed alpha
Helix 90	AJ9	F	286	291	Right-handed 310
Helix 91	AK1	F	293	300	Right-handed alpha
Helix 92	AK2	F	301	308	Right-handed alpha
Helix 93	AK3	F	321	329	Right-handed alpha
Helix 94	AK4	G	27	31	Right-handed 310
Helix 95	AK5	G	34	50	Right-handed alpha
Helix 96	AK6	G	67	79	Right-handed alpha
Helix 97	AK7	G	93	104	Right-handed alpha
Helix 98	AK8	G	115	118	Right-handed 310
Helix 99	AK9	G	119	133	Right-handed alpha
Helix 100	AL1	G	163	168	Right-handed 310
Helix 101	AL2	G	169	175	Right-handed 310
Helix 102	AL3	G	185	201	Right-handed alpha
Helix 103	AL4	G	205	214	Right-handed alpha
Helix 104	AL5	G	219	238	Right-handed alpha
Helix 105	AL6	G	243	249	Right-handed 310
Helix 106	AL7	G	262	274	Right-handed alpha
Helix 107	AL8	G	286	291	Right-handed 310
Helix 108	AL9	G	293	300	Right-handed alpha
Helix 109	AM1	G	301	308	Right-handed alpha
Helix 110	AM2	G	321	329	Right-handed alpha
Helix 111	AM3	H	27	31	Right-handed 310
Helix 112	AM4	H	34	52	Right-handed alpha
Helix 113	AM5	H	67	80	Right-handed alpha
Helix 114	AM6	H	93	103	Right-handed alpha
Helix 115	AM7	H	115	118	Right-handed 310
Helix 116	AM8	H	119	132	Right-handed alpha
Helix 117	AM9	H	168	174	Right-handed alpha
Helix 118	AN1	H	185	195	Right-handed alpha
Helix 119	AN2	I	37	52	Right-handed alpha
Helix 120	AN3	I	67	80	Right-handed alpha
Helix 121	AN4	I	93	103	Right-handed alpha
Helix 122	AN5	I	115	118	Right-handed 310
Helix 123	AN6	I	119	133	Right-handed alpha
Helix 124	AN7	I	163	167	Right-handed 310
Helix 125	AN8	I	168	173	Right-handed alpha

There are 23 sheets in PDB entry 9DX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	109	113	parallel
Strand 3	A	156	161	parallel
Strand 4	A	58	61	parallel
Strand 5	A	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	148	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	318	320	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	108	113	parallel
Strand 3	B	155	161	parallel
Strand 4	B	58	61	parallel
Strand 5	B	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	109	113	parallel
Strand 3	C	156	161	parallel
Strand 4	C	58	61	parallel
Strand 5	C	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	177	180	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	108	113	parallel
Strand 3	D	155	158	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	312	first strand
Strand 2	D	319	320	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	87	first strand
Strand 2	E	109	113	parallel
Strand 3	E	156	161	parallel
Strand 4	E	58	61	parallel
Strand 5	E	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	139	first strand
Strand 2	E	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	313	first strand
Strand 2	E	318	320	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	87	first strand
Strand 2	F	108	113	parallel
Strand 3	F	155	161	parallel
Strand 4	F	58	61	parallel
Strand 5	F	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	139	first strand
Strand 2	F	146	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	87	first strand
Strand 2	G	108	113	parallel
Strand 3	G	155	161	parallel
Strand 4	G	58	61	parallel
Strand 5	G	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	139	first strand
Strand 2	G	146	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	311	313	first strand
Strand 2	G	318	320	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	87	first strand
Strand 2	H	108	113	parallel
Strand 3	H	155	161	parallel
Strand 4	H	58	61	parallel
Strand 5	H	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	87	first strand
Strand 2	I	109	113	parallel
Strand 3	I	156	161	parallel
Strand 4	I	58	61	parallel
Strand 5	I	177	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	138	first strand
Strand 2	I	147	151	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DX3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX3