Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DX5 entry

There are 6 chains in PDB entry 9DX5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	PRO 332
B	ILE 23	PRO 332
C	ALA 22	PRO 332
D	ALA 19	LEU 305
E	ARG 24	ILE 330
F	ALA 19	GLN 308

There are 98 helices in PDB entry 9DX5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	34	52	Right-handed alpha
Helix 3	AA3	A	68	78	Right-handed alpha
Helix 4	AA4	A	93	103	Right-handed alpha
Helix 5	AA5	A	114	118	Right-handed 310
Helix 6	AA6	A	119	132	Right-handed alpha
Helix 7	AA7	A	168	173	Right-handed alpha
Helix 8	AA8	A	185	200	Right-handed alpha
Helix 9	AA9	A	205	215	Right-handed alpha
Helix 10	AB1	A	220	238	Right-handed alpha
Helix 11	AB2	A	243	253	Right-handed alpha
Helix 12	AB3	A	262	275	Right-handed alpha
Helix 13	AB4	A	282	291	Right-handed alpha
Helix 14	AB5	A	293	300	Right-handed alpha
Helix 15	AB6	A	301	306	Right-handed alpha
Helix 16	AB7	A	321	328	Right-handed alpha
Helix 17	AB8	B	34	52	Right-handed alpha
Helix 18	AB9	B	69	80	Right-handed alpha
Helix 19	AC1	B	93	103	Right-handed alpha
Helix 20	AC2	B	114	118	Right-handed 310
Helix 21	AC3	B	119	132	Right-handed alpha
Helix 22	AC4	B	163	167	Right-handed 310
Helix 23	AC5	B	168	173	Right-handed alpha
Helix 24	AC6	B	185	200	Right-handed alpha
Helix 25	AC7	B	205	215	Right-handed alpha
Helix 26	AC8	B	221	238	Right-handed alpha
Helix 27	AC9	B	243	252	Right-handed alpha
Helix 28	AD1	B	262	275	Right-handed alpha
Helix 29	AD2	B	293	300	Right-handed alpha
Helix 30	AD3	B	300	306	Right-handed alpha
Helix 31	AD4	B	321	329	Right-handed alpha
Helix 32	AD5	C	27	31	Right-handed 310
Helix 33	AD6	C	34	52	Right-handed alpha
Helix 34	AD7	C	67	80	Right-handed alpha
Helix 35	AD8	C	93	103	Right-handed alpha
Helix 36	AD9	C	115	118	Right-handed 310
Helix 37	AE1	C	119	131	Right-handed alpha
Helix 38	AE2	C	163	167	Right-handed 310
Helix 39	AE3	C	168	174	Right-handed alpha
Helix 40	AE4	C	185	200	Right-handed alpha
Helix 41	AE5	C	205	217	Right-handed alpha
Helix 42	AE6	C	219	238	Right-handed alpha
Helix 43	AE7	C	245	254	Right-handed alpha
Helix 44	AE8	C	262	275	Right-handed alpha
Helix 45	AE9	C	282	290	Right-handed alpha
Helix 46	AF1	C	293	300	Right-handed alpha
Helix 47	AF2	C	301	307	Right-handed alpha
Helix 48	AF3	C	321	329	Right-handed alpha
Helix 49	AF4	D	20	24	Right-handed alpha
Helix 50	AF5	D	27	31	Right-handed 310
Helix 51	AF6	D	34	52	Right-handed alpha
Helix 52	AF7	D	67	80	Right-handed alpha
Helix 53	AF8	D	93	103	Right-handed alpha
Helix 54	AF9	D	115	118	Right-handed 310
Helix 55	AG1	D	119	132	Right-handed alpha
Helix 56	AG2	D	168	173	Right-handed alpha
Helix 57	AG3	D	185	200	Right-handed alpha
Helix 58	AG4	D	205	215	Right-handed alpha
Helix 59	AG5	D	219	238	Right-handed alpha
Helix 60	AG6	D	243	254	Right-handed alpha
Helix 61	AG7	D	262	275	Right-handed alpha
Helix 62	AG8	D	282	290	Right-handed alpha
Helix 63	AG9	D	293	300	Right-handed alpha
Helix 64	AH1	E	27	31	Right-handed 310
Helix 65	AH2	E	34	52	Right-handed alpha
Helix 66	AH3	E	67	79	Right-handed alpha
Helix 67	AH4	E	115	118	Right-handed 310
Helix 68	AH5	E	119	133	Right-handed alpha
Helix 69	AH6	E	163	167	Right-handed 310
Helix 70	AH7	E	168	174	Right-handed alpha
Helix 71	AH8	E	185	200	Right-handed alpha
Helix 72	AH9	E	205	215	Right-handed alpha
Helix 73	AI1	E	219	238	Right-handed alpha
Helix 74	AI2	E	243	251	Right-handed alpha
Helix 75	AI3	E	262	268	Right-handed alpha
Helix 76	AI4	E	271	276	Right-handed alpha
Helix 77	AI5	E	282	291	Right-handed alpha
Helix 78	AI6	E	293	300	Right-handed alpha
Helix 79	AI7	E	301	307	Right-handed alpha
Helix 80	AI8	E	321	329	Right-handed alpha
Helix 81	AI9	F	20	24	Right-handed alpha
Helix 82	AJ1	F	27	31	Right-handed 310
Helix 83	AJ2	F	34	52	Right-handed alpha
Helix 84	AJ3	F	67	80	Right-handed alpha
Helix 85	AJ4	F	89	91	Right-handed 310
Helix 86	AJ5	F	93	103	Right-handed alpha
Helix 87	AJ6	F	115	118	Right-handed 310
Helix 88	AJ7	F	119	132	Right-handed alpha
Helix 89	AJ8	F	163	167	Right-handed 310
Helix 90	AJ9	F	168	173	Right-handed alpha
Helix 91	AK1	F	185	200	Right-handed alpha
Helix 92	AK2	F	205	215	Right-handed alpha
Helix 93	AK3	F	221	238	Right-handed alpha
Helix 94	AK4	F	243	250	Right-handed alpha
Helix 95	AK5	F	262	275	Right-handed alpha
Helix 96	AK6	F	282	291	Right-handed alpha
Helix 97	AK7	F	293	301	Right-handed alpha
Helix 98	AK8	F	301	308	Right-handed alpha

There are 8 sheets in PDB entry 9DX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	108	113	parallel
Strand 3	A	155	161	parallel
Strand 4	A	58	61	parallel
Strand 5	A	177	178	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	317	319	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	108	113	parallel
Strand 3	B	155	161	parallel
Strand 4	B	58	61	parallel
Strand 5	B	177	180	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	108	113	parallel
Strand 3	C	155	161	parallel
Strand 4	C	58	61	parallel
Strand 5	C	177	180	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	317	320	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	108	113	parallel
Strand 3	D	155	161	parallel
Strand 4	D	58	61	parallel
Strand 5	D	177	180	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	113	first strand
Strand 2	E	155	161	parallel
Strand 3	E	58	61	parallel
Strand 4	E	177	180	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	87	first strand
Strand 2	F	108	113	parallel
Strand 3	F	155	161	parallel
Strand 4	F	58	61	parallel
Strand 5	F	177	180	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DX5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX5