Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DX6 entry

There are 3 chains in PDB entry 9DX6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 46	TYR 474
B	GLN 1	PRO 231
C	GLU 1	GLY 214

There are 24 helices in PDB entry 9DX6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed 310
Helix 2	AA2	A	63	68	Right-handed alpha
Helix 3	AA3	A	120	124	Right-handed 310
Helix 4	AA4	A	140	147	Right-handed alpha
Helix 5	AA5	A	152	156	Right-handed 310
Helix 6	AA6	A	157	169	Right-handed alpha
Helix 7	AA7	A	205	209	Right-handed 310
Helix 8	AA8	A	226	230	Right-handed 310
Helix 9	AA9	A	242	247	Right-handed alpha
Helix 10	AB1	A	278	289	Right-handed alpha
Helix 11	AB2	A	305	314	Right-handed alpha
Helix 12	AB3	A	316	322	Right-handed alpha
Helix 13	AB4	A	389	400	Right-handed alpha
Helix 14	AB5	A	460	462	Right-handed 310
Helix 15	AB6	A	467	472	Right-handed alpha
Helix 16	AB7	B	65	67	Right-handed 310
Helix 17	AB8	B	88	92	Right-handed 310
Helix 18	AB9	B	145	147	Right-handed 310
Helix 19	AC1	B	174	176	Right-handed 310
Helix 20	AC2	B	205	210	Right-handed 310
Helix 21	AC3	B	219	222	Right-handed 310
Helix 22	AC4	C	79	83	Right-handed 310
Helix 23	AC5	C	123	129	Right-handed alpha
Helix 24	AC6	C	185	191	Right-handed alpha

There are 18 sheets in PDB entry 9DX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	85	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	183	186	anti-parallel
Strand 4	A	191	194	anti-parallel
Strand 5	A	138	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	221	224	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	B	93	107	anti-parallel
Strand 3	B	34	41	anti-parallel
Strand 4	B	48	53	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	125	129	parallel
Strand 3	B	93	107	anti-parallel
Strand 4	B	110	121	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	251	260	anti-parallel
Strand 3	A	363	374	anti-parallel
Strand 4	A	344	348	anti-parallel
Strand 5	A	353	357	anti-parallel
Strand 6	A	272	275	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	251	260	anti-parallel
Strand 3	A	382	383	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	447	448	anti-parallel
Strand 3	A	437	438	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	458	first strand
Strand 2	A	464	466	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	153	163	anti-parallel
Strand 3	B	194	203	anti-parallel
Strand 4	B	181	183	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	153	163	anti-parallel
Strand 3	B	194	203	anti-parallel
Strand 4	B	187	188	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	223	228	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	104	108	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	104	108	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	99	100	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	131	141	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	161	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	147	152	anti-parallel
Strand 3	C	193	199	anti-parallel
Strand 4	C	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DX6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DX6