Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DXH entry

There are 12 chains in PDB entry 9DXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	ASP 537
C	LEU 3	ASP 537
E	T -34	T -1
F	A 2	A 34
G	C -25	T -1
H	A 2	G 25
I	LEU 3	ASP 537
K	LEU 3	ASP 537
M	T -34	T -1
N	A 2	A 34
O	C -25	T -1
P	A 2	G 25

There are 78 helices in PDB entry 9DXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	22	33	Right-handed alpha
Helix 3	AA3	A	35	52	Right-handed alpha
Helix 4	AA4	A	70	83	Right-handed alpha
Helix 5	AA5	A	92	97	Right-handed alpha
Helix 6	AA6	A	99	115	Right-handed alpha
Helix 7	AA7	A	129	164	Right-handed alpha
Helix 8	AA8	A	188	205	Right-handed alpha
Helix 9	AA9	A	212	224	Right-handed alpha
Helix 10	AB1	A	235	244	Right-handed alpha
Helix 11	AB2	A	245	250	Right-handed 310
Helix 12	AB3	A	285	299	Right-handed alpha
Helix 13	AB4	A	362	380	Right-handed alpha
Helix 14	AB5	A	381	396	Right-handed alpha
Helix 15	AB6	A	405	433	Right-handed alpha
Helix 16	AB7	A	437	464	Right-handed alpha
Helix 17	AB8	A	473	491	Right-handed alpha
Helix 18	AB9	A	493	505	Right-handed alpha
Helix 19	AC1	A	531	537	Right-handed alpha
Helix 20	AC2	C	4	9	Right-handed alpha
Helix 21	AC3	C	22	31	Right-handed alpha
Helix 22	AC4	C	35	52	Right-handed alpha
Helix 23	AC5	C	66	69	Right-handed 310
Helix 24	AC6	C	70	82	Right-handed alpha
Helix 25	AC7	C	92	96	Right-handed 310
Helix 26	AC8	C	102	115	Right-handed alpha
Helix 27	AC9	C	129	164	Right-handed alpha
Helix 28	AD1	C	188	205	Right-handed alpha
Helix 29	AD2	C	212	223	Right-handed alpha
Helix 30	AD3	C	235	244	Right-handed alpha
Helix 31	AD4	C	245	250	Right-handed 310
Helix 32	AD5	C	285	299	Right-handed alpha
Helix 33	AD6	C	363	380	Right-handed alpha
Helix 34	AD7	C	381	401	Right-handed alpha
Helix 35	AD8	C	405	433	Right-handed alpha
Helix 36	AD9	C	437	465	Right-handed alpha
Helix 37	AE1	C	473	491	Right-handed alpha
Helix 38	AE2	C	493	504	Right-handed alpha
Helix 39	AE3	C	531	537	Right-handed alpha
Helix 40	AE4	I	4	10	Right-handed alpha
Helix 41	AE5	I	22	33	Right-handed alpha
Helix 42	AE6	I	35	52	Right-handed alpha
Helix 43	AE7	I	70	83	Right-handed alpha
Helix 44	AE8	I	92	97	Right-handed alpha
Helix 45	AE9	I	99	115	Right-handed alpha
Helix 46	AF1	I	129	164	Right-handed alpha
Helix 47	AF2	I	188	205	Right-handed alpha
Helix 48	AF3	I	212	224	Right-handed alpha
Helix 49	AF4	I	235	244	Right-handed alpha
Helix 50	AF5	I	245	250	Right-handed 310
Helix 51	AF6	I	285	299	Right-handed alpha
Helix 52	AF7	I	362	380	Right-handed alpha
Helix 53	AF8	I	381	396	Right-handed alpha
Helix 54	AF9	I	405	433	Right-handed alpha
Helix 55	AG1	I	437	464	Right-handed alpha
Helix 56	AG2	I	473	491	Right-handed alpha
Helix 57	AG3	I	493	505	Right-handed alpha
Helix 58	AG4	I	531	537	Right-handed alpha
Helix 59	AG5	K	4	10	Right-handed alpha
Helix 60	AG6	K	22	31	Right-handed alpha
Helix 61	AG7	K	35	52	Right-handed alpha
Helix 62	AG8	K	66	69	Right-handed 310
Helix 63	AG9	K	70	82	Right-handed alpha
Helix 64	AH1	K	92	96	Right-handed 310
Helix 65	AH2	K	102	115	Right-handed alpha
Helix 66	AH3	K	129	164	Right-handed alpha
Helix 67	AH4	K	188	205	Right-handed alpha
Helix 68	AH5	K	212	223	Right-handed alpha
Helix 69	AH6	K	235	244	Right-handed alpha
Helix 70	AH7	K	245	250	Right-handed 310
Helix 71	AH8	K	285	299	Right-handed alpha
Helix 72	AH9	K	363	380	Right-handed alpha
Helix 73	AI1	K	381	401	Right-handed alpha
Helix 74	AI2	K	405	433	Right-handed alpha
Helix 75	AI3	K	437	465	Right-handed alpha
Helix 76	AI4	K	473	491	Right-handed alpha
Helix 77	AI5	K	493	504	Right-handed alpha
Helix 78	AI6	K	531	537	Right-handed alpha

There are 25 sheets in PDB entry 9DXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	15	19	parallel
Strand 3	A	87	89	parallel
Strand 4	A	117	120	parallel
Strand 5	A	123	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	184	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	274	276	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	259	first strand
Strand 2	A	265	267	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	507	514	parallel
Strand 3	A	523	529	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	337	first strand
Strand 2	A	343	352	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	15	19	parallel
Strand 3	C	87	89	parallel
Strand 4	C	117	119	parallel
Strand 5	C	124	125	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	184	187	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	274	276	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	259	first strand
Strand 2	C	265	267	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	505	514	parallel
Strand 3	C	523	530	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	337	first strand
Strand 2	C	343	352	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	59	first strand
Strand 2	I	15	19	parallel
Strand 3	I	87	89	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	120	first strand
Strand 2	I	123	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	176	179	first strand
Strand 2	I	184	187	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	252	254	first strand
Strand 2	I	274	276	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	259	first strand
Strand 2	I	265	267	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	318	320	first strand
Strand 2	I	507	514	parallel
Strand 3	I	523	529	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	328	337	first strand
Strand 2	I	343	352	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	59	first strand
Strand 2	K	15	19	parallel
Strand 3	K	87	89	parallel
Strand 4	K	117	119	parallel
Strand 5	K	124	125	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	179	first strand
Strand 2	K	184	187	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	252	254	first strand
Strand 2	K	274	276	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	257	259	first strand
Strand 2	K	265	267	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	318	320	first strand
Strand 2	K	505	514	parallel
Strand 3	K	523	530	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	328	337	first strand
Strand 2	K	343	352	anti-parallel
Strand 3	K	360	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXH