Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DXM entry

There are 2 chains in PDB entry 9DXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5LYS 1116
B
 VAL 10GLU 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9DXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
22 39Right-handed alpha
Helix 3
AA3
A
41 53Right-handed alpha
Helix 4
AA4
A
56 74Right-handed alpha
Helix 5
AA5
A
79 96Right-handed alpha
Helix 6
AA6
A
102 121Right-handed alpha
Helix 7
AA7
A
122 127Right-handed 310
Helix 8
AA8
A
131 138Right-handed alpha
Helix 9
AA9
A
141 153Right-handed alpha
Helix 10
AB1
A
153 173Right-handed alpha
Helix 11
AB2
A
176 181Right-handed alpha
Helix 12
AB3
A
182 195Right-handed alpha
Helix 13
AB4
A
196 204Right-handed alpha
Helix 14
AB5
A
207 212Right-handed alpha
Helix 15
AB6
A
220 235Right-handed alpha
Helix 16
AB7
A
236 248Right-handed alpha
Helix 17
AB8
A
255 263Right-handed alpha
Helix 18
AB9
A
263 273Right-handed alpha
Helix 19
AC1
A
276 293Right-handed alpha
Helix 20
AC2
A
297 311Right-handed alpha
Helix 21
AC3
A
311 323Right-handed alpha
Helix 22
AC4
A
334 347Right-handed alpha
Helix 23
AC5
A
348 355Right-handed 310
Helix 24
AC6
A
360 374Right-handed alpha
Helix 25
AC7
A
377 393Right-handed alpha
Helix 26
AC8
A
397 405Right-handed alpha
Helix 27
AC9
A
405 416Right-handed alpha
Helix 28
AD1
A
419 423Right-handed 310
Helix 29
AD2
A
428 436Right-handed alpha
Helix 30
AD3
A
438 464Right-handed alpha
Helix 31
AD4
A
464 480Right-handed alpha
Helix 32
AD5
A
482 490Right-handed alpha
Helix 33
AD6
A
498 525Right-handed alpha
Helix 34
AD7
A
530 551Right-handed alpha
Helix 35
AD8
A
556 571Right-handed alpha
Helix 36
AD9
A
575 591Right-handed alpha
Helix 37
AE1
A
603 627Right-handed alpha
Helix 38
AE2
A
627 633Right-handed alpha
Helix 39
AE3
A
634 646Right-handed alpha
Helix 40
AE4
A
647 649Right-handed 310
Helix 41
AE5
A
650 668Right-handed alpha
Helix 42
AE6
A
672 686Right-handed alpha
Helix 43
AE7
A
687 689Right-handed 310
Helix 44
AE8
A
690 697Right-handed alpha
Helix 45
AE9
A
699 708Right-handed alpha
Helix 46
AF1
A
708 719Right-handed alpha
Helix 47
AF2
A
726 730Right-handed 310
Helix 48
AF3
A
733 751Right-handed alpha
Helix 49
AF4
A
752 764Right-handed alpha
Helix 50
AF5
A
769 785Right-handed alpha
Helix 51
AF6
A
787 802Right-handed alpha
Helix 52
AF7
A
806 810Right-handed 310
Helix 53
AF8
A
811 813Right-handed 310
Helix 54
AF9
A
814 822Right-handed alpha
Helix 55
AG1
A
849 877Right-handed alpha
Helix 56
AG2
A
879 884Right-handed alpha
Helix 57
AG3
A
887 897Right-handed alpha
Helix 58
AG4
A
911 922Right-handed alpha
Helix 59
AG5
A
922 929Right-handed alpha
Helix 60
AG6
A
934 960Right-handed alpha
Helix 61
AG7
A
979 1003Right-handed alpha
Helix 62
AG8
A
1017 1030Right-handed alpha
Helix 63
AG9
A
1030 1047Right-handed alpha
Helix 64
AH1
A
1049 1068Right-handed alpha
Helix 65
AH2
A
1073 1086Right-handed alpha
Helix 66
AH3
A
1102 1115Right-handed alpha
Helix 67
AH4
B
24 34Right-handed alpha
Helix 68
AH5
B
79 83Right-handed 310
Helix 69
AH6
B
96 102Right-handed alpha
Helix 70
AH7
B
102 112Right-handed alpha
Helix 71
AH8
B
139 145Right-handed alpha
Helix 72
AH9
B
155 159Right-handed 310
Helix 73
AI1
B
160 172Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9DXM.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
119 124parallel
Strand 3
B
87 93parallel
Strand 4
B
12 19parallel
Strand 5
B
59 68parallel
Strand 6
B
47 56anti-parallel
Strand 7
B
178 179anti-parallel
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