Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DXN entry

There are 3 chains in PDB entry 9DXN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	PHE 1033
C	MET 1	SER 1034
A	MET 1	ARG 1032

There are135 helices in PDB entry 9DXN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	7	Right-handed alpha
Helix 2	AA2	B	8	29	Right-handed alpha
Helix 3	AA3	B	53	61	Right-handed alpha
Helix 4	AA4	B	61	68	Right-handed alpha
Helix 5	AA5	B	99	115	Right-handed alpha
Helix 6	AA6	B	116	118	Right-handed 310
Helix 7	AA7	B	119	126	Right-handed alpha
Helix 8	AA8	B	150	162	Right-handed alpha
Helix 9	AA9	B	162	167	Right-handed alpha
Helix 10	AB1	B	189	196	Right-handed alpha
Helix 11	AB2	B	199	209	Right-handed alpha
Helix 12	AB3	B	242	248	Right-handed alpha
Helix 13	AB4	B	262	265	Right-handed alpha
Helix 14	AB5	B	303	314	Right-handed alpha
Helix 15	AB6	B	315	317	Right-handed 310
Helix 16	AB7	B	329	359	Right-handed alpha
Helix 17	AB8	B	361	386	Right-handed alpha
Helix 18	AB9	B	391	424	Right-handed alpha
Helix 19	AC1	B	426	438	Right-handed alpha
Helix 20	AC2	B	438	454	Right-handed alpha
Helix 21	AC3	B	455	459	Right-handed 310
Helix 22	AC4	B	461	487	Right-handed alpha
Helix 23	AC5	B	487	496	Right-handed alpha
Helix 24	AC6	B	517	537	Right-handed alpha
Helix 25	AC7	B	539	558	Right-handed alpha
Helix 26	AC8	B	583	588	Right-handed alpha
Helix 27	AC9	B	590	601	Right-handed alpha
Helix 28	AD1	B	633	637	Right-handed 310
Helix 29	AD2	B	639	642	Right-handed 310
Helix 30	AD3	B	643	655	Right-handed alpha
Helix 31	AD4	B	656	658	Right-handed 310
Helix 32	AD5	B	692	707	Right-handed alpha
Helix 33	AD6	B	732	740	Right-handed alpha
Helix 34	AD7	B	742	756	Right-handed alpha
Helix 35	AD8	B	777	780	Right-handed 310
Helix 36	AD9	B	782	788	Right-handed 310
Helix 37	AE1	B	801	804	Right-handed alpha
Helix 38	AE2	B	836	848	Right-handed alpha
Helix 39	AE3	B	849	851	Right-handed 310
Helix 40	AE4	B	861	870	Right-handed alpha
Helix 41	AE5	B	871	892	Right-handed alpha
Helix 42	AE6	B	896	903	Right-handed alpha
Helix 43	AE7	B	904	920	Right-handed alpha
Helix 44	AE8	B	924	957	Right-handed alpha
Helix 45	AE9	B	961	991	Right-handed alpha
Helix 46	AF1	B	998	1017	Right-handed alpha
Helix 47	AF2	B	1018	1020	Right-handed 310
Helix 48	AF3	B	1021	1031	Right-handed alpha
Helix 49	AF4	C	2	7	Right-handed alpha
Helix 50	AF5	C	8	25	Right-handed alpha
Helix 51	AF6	C	25	30	Right-handed alpha
Helix 52	AF7	C	53	61	Right-handed alpha
Helix 53	AF8	C	61	66	Right-handed alpha
Helix 54	AF9	C	99	112	Right-handed alpha
Helix 55	AG1	C	119	126	Right-handed alpha
Helix 56	AG2	C	150	168	Right-handed alpha
Helix 57	AG3	C	189	196	Right-handed alpha
Helix 58	AG4	C	199	211	Right-handed alpha
Helix 59	AG5	C	242	248	Right-handed alpha
Helix 60	AG6	C	298	314	Right-handed alpha
Helix 61	AG7	C	315	317	Right-handed 310
Helix 62	AG8	C	329	359	Right-handed alpha
Helix 63	AG9	C	361	366	Right-handed alpha
Helix 64	AH1	C	366	386	Right-handed alpha
Helix 65	AH2	C	391	406	Right-handed alpha
Helix 66	AH3	C	406	423	Right-handed alpha
Helix 67	AH4	C	426	434	Right-handed alpha
Helix 68	AH5	C	439	452	Right-handed alpha
Helix 69	AH6	C	454	459	Right-handed 310
Helix 70	AH7	C	461	487	Right-handed alpha
Helix 71	AH8	C	487	496	Right-handed alpha
Helix 72	AH9	C	514	537	Right-handed alpha
Helix 73	AI1	C	538	559	Right-handed alpha
Helix 74	AI2	C	583	601	Right-handed alpha
Helix 75	AI3	C	633	637	Right-handed 310
Helix 76	AI4	C	639	642	Right-handed 310
Helix 77	AI5	C	643	656	Right-handed alpha
Helix 78	AI6	C	692	707	Right-handed alpha
Helix 79	AI7	C	732	740	Right-handed alpha
Helix 80	AI8	C	742	754	Right-handed alpha
Helix 81	AI9	C	777	780	Right-handed 310
Helix 82	AJ1	C	782	787	Right-handed 310
Helix 83	AJ2	C	836	850	Right-handed alpha
Helix 84	AJ3	C	861	893	Right-handed alpha
Helix 85	AJ4	C	896	901	Right-handed alpha
Helix 86	AJ5	C	904	917	Right-handed alpha
Helix 87	AJ6	C	924	954	Right-handed alpha
Helix 88	AJ7	C	959	971	Right-handed alpha
Helix 89	AJ8	C	972	992	Right-handed alpha
Helix 90	AJ9	C	998	1017	Right-handed alpha
Helix 91	AK1	C	1017	1034	Right-handed alpha
Helix 92	AK2	A	8	30	Right-handed alpha
Helix 93	AK3	A	53	61	Right-handed alpha
Helix 94	AK4	A	99	115	Right-handed alpha
Helix 95	AK5	A	116	118	Right-handed 310
Helix 96	AK6	A	119	126	Right-handed alpha
Helix 97	AK7	A	150	162	Right-handed alpha
Helix 98	AK8	A	162	168	Right-handed alpha
Helix 99	AK9	A	189	196	Right-handed alpha
Helix 100	AL1	A	199	211	Right-handed alpha
Helix 101	AL2	A	242	248	Right-handed alpha
Helix 102	AL3	A	262	265	Right-handed alpha
Helix 103	AL4	A	298	314	Right-handed alpha
Helix 104	AL5	A	315	317	Right-handed 310
Helix 105	AL6	A	329	360	Right-handed alpha
Helix 106	AL7	A	366	387	Right-handed alpha
Helix 107	AL8	A	391	424	Right-handed alpha
Helix 108	AL9	A	426	450	Right-handed alpha
Helix 109	AM1	A	453	458	Right-handed alpha
Helix 110	AM2	A	460	496	Right-handed alpha
Helix 111	AM3	A	516	536	Right-handed alpha
Helix 112	AM4	A	539	559	Right-handed alpha
Helix 113	AM5	A	583	602	Right-handed alpha
Helix 114	AM6	A	603	606	Right-handed 310
Helix 115	AM7	A	633	637	Right-handed 310
Helix 116	AM8	A	639	642	Right-handed 310
Helix 117	AM9	A	643	657	Right-handed alpha
Helix 118	AN1	A	690	708	Right-handed alpha
Helix 119	AN2	A	732	740	Right-handed alpha
Helix 120	AN3	A	744	756	Right-handed alpha
Helix 121	AN4	A	777	780	Right-handed 310
Helix 122	AN5	A	782	788	Right-handed 310
Helix 123	AN6	A	836	841	Right-handed alpha
Helix 124	AN7	A	842	849	Right-handed alpha
Helix 125	AN8	A	860	867	Right-handed alpha
Helix 126	AN9	A	872	893	Right-handed alpha
Helix 127	AO1	A	896	901	Right-handed 310
Helix 128	AO2	A	904	920	Right-handed alpha
Helix 129	AO3	A	924	955	Right-handed alpha
Helix 130	AO4	A	968	970	Right-handed 310
Helix 131	AO5	A	971	986	Right-handed alpha
Helix 132	AO6	A	986	991	Right-handed alpha
Helix 133	AO7	A	996	1017	Right-handed alpha
Helix 134	AO8	A	1018	1020	Right-handed 310
Helix 135	AO9	A	1021	1032	Right-handed alpha

There are 24 sheets in PDB entry 9DXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	713	718	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	822	831	anti-parallel
Strand 3	B	682	686	anti-parallel
Strand 4	B	855	859	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	284	287	anti-parallel
Strand 5	B	278	281	anti-parallel
Strand 6	B	606	613	anti-parallel
Strand 7	B	624	631	anti-parallel
Strand 8	B	571	577	anti-parallel
Strand 9	B	663	666	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	768	775	parallel
Strand 4	B	757	763	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	233	235	anti-parallel
Strand 3	C	726	731	parallel
Strand 4	C	805	810	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	260	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	812	first strand
Strand 2	B	724	731	anti-parallel
Strand 3	A	232	237	parallel
Strand 4	A	214	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	827	anti-parallel
Strand 7	C	682	686	anti-parallel
Strand 8	C	855	859	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	290	293	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	284	287	anti-parallel
Strand 5	C	278	281	anti-parallel
Strand 6	C	606	615	anti-parallel
Strand 7	C	620	631	anti-parallel
Strand 8	C	576	577	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	328	first strand
Strand 2	C	138	143	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	278	281	anti-parallel
Strand 5	C	606	615	anti-parallel
Strand 6	C	620	631	anti-parallel
Strand 7	C	571	573	anti-parallel
Strand 8	C	666	667	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	767	775	parallel
Strand 4	C	757	764	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	A	724	731	parallel
Strand 4	A	805	812	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	714	first strand
Strand 2	C	830	831	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	823	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	324	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	608	613	anti-parallel
Strand 5	A	624	630	anti-parallel
Strand 6	A	571	577	anti-parallel
Strand 7	A	662	664	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	757	764	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	718	first strand
Strand 2	A	826	831	anti-parallel
Strand 3	A	681	683	anti-parallel
Strand 4	A	858	859	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DXN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXN