Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DXP entry

There is 1 chain in PDB entry 9DXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 40ASN 667
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9DXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 75Right-handed alpha
Helix 2
AA2
A
77 103Right-handed alpha
Helix 3
AA3
A
107 128Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
186 202Right-handed alpha
Helix 6
AA6
A
203 216Right-handed alpha
Helix 7
AA7
A
217 248Right-handed alpha
Helix 8
AA8
A
257 261Right-handed 310
Helix 9
AA9
A
273 289Right-handed alpha
Helix 10
AB1
A
290 294Right-handed 310
Helix 11
AB2
A
334 351Right-handed alpha
Helix 12
AB3
A
352 375Right-handed alpha
Helix 13
AB4
A
375 385Right-handed alpha
Helix 14
AB5
A
387 398Right-handed alpha
Helix 15
AB6
A
398 417Right-handed alpha
Helix 16
AB7
A
420 441Right-handed alpha
Helix 17
AB8
A
442 445Right-handed 310
Helix 18
AB9
A
474 478Right-handed 310
Helix 19
AC1
A
501 505Right-handed 310
Helix 20
AC2
A
521 526Right-handed alpha
Helix 21
AC3
A
546 567Right-handed alpha
Helix 22
AC4
A
568 579Right-handed alpha
Helix 23
AC5
A
581 583Right-handed 310
Helix 24
AC6
A
584 600Right-handed alpha
Helix 25
AC7
A
602 614Right-handed alpha
Helix 26
AC8
A
634 667Right-handed alpha
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There are 2 sheets in PDB entry 9DXP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
490 492anti-parallel
Strand 3
A
535 538anti-parallel
Strand 4
A
515 519anti-parallel
Strand 5
A
508 512anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 621first strand
Strand 2
A
627 633anti-parallel
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