Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DXS entry

There are 4 chains in PDB entry 9DXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 429	ARG 874
B	SER 429	ARG 874
C	SER 429	ARG 874
D	SER 429	ARG 874

There are 66 helices in PDB entry 9DXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	461	475	Right-handed alpha
Helix 2	AA2	A	500	507	Right-handed alpha
Helix 3	AA3	A	520	525	Right-handed alpha
Helix 4	AA4	A	553	557	Right-handed 310
Helix 5	AA5	A	562	585	Right-handed alpha
Helix 6	AA6	A	607	620	Right-handed alpha
Helix 7	AA7	A	630	665	Right-handed alpha
Helix 8	AA8	A	671	676	Right-handed alpha
Helix 9	AA9	A	688	696	Right-handed alpha
Helix 10	AB1	A	699	712	Right-handed alpha
Helix 11	AB2	A	720	730	Right-handed alpha
Helix 12	AB3	A	739	749	Right-handed alpha
Helix 13	AB4	A	776	788	Right-handed alpha
Helix 14	AB5	A	789	800	Right-handed alpha
Helix 15	AB6	A	822	850	Right-handed alpha
Helix 16	AB7	A	856	869	Right-handed alpha
Helix 17	AB8	B	461	474	Right-handed alpha
Helix 18	AB9	B	499	507	Right-handed alpha
Helix 19	AC1	B	520	525	Right-handed alpha
Helix 20	AC2	B	560	585	Right-handed alpha
Helix 21	AC3	B	586	589	Right-handed 310
Helix 22	AC4	B	607	620	Right-handed alpha
Helix 23	AC5	B	630	632	Right-handed 310
Helix 24	AC6	B	633	661	Right-handed alpha
Helix 25	AC7	B	670	677	Right-handed alpha
Helix 26	AC8	B	688	697	Right-handed alpha
Helix 27	AC9	B	699	712	Right-handed alpha
Helix 28	AD1	B	720	731	Right-handed alpha
Helix 29	AD2	B	739	749	Right-handed alpha
Helix 30	AD3	B	773	789	Right-handed alpha
Helix 31	AD4	B	789	800	Right-handed alpha
Helix 32	AD5	B	821	850	Right-handed alpha
Helix 33	AD6	B	857	868	Right-handed alpha
Helix 34	AD7	C	461	475	Right-handed alpha
Helix 35	AD8	C	500	507	Right-handed alpha
Helix 36	AD9	C	520	525	Right-handed alpha
Helix 37	AE1	C	553	557	Right-handed 310
Helix 38	AE2	C	562	585	Right-handed alpha
Helix 39	AE3	C	607	620	Right-handed alpha
Helix 40	AE4	C	630	665	Right-handed alpha
Helix 41	AE5	C	671	676	Right-handed alpha
Helix 42	AE6	C	688	696	Right-handed alpha
Helix 43	AE7	C	699	712	Right-handed alpha
Helix 44	AE8	C	720	730	Right-handed alpha
Helix 45	AE9	C	739	749	Right-handed alpha
Helix 46	AF1	C	776	788	Right-handed alpha
Helix 47	AF2	C	789	799	Right-handed alpha
Helix 48	AF3	C	822	850	Right-handed alpha
Helix 49	AF4	C	856	869	Right-handed alpha
Helix 50	AF5	D	461	474	Right-handed alpha
Helix 51	AF6	D	499	507	Right-handed alpha
Helix 52	AF7	D	520	525	Right-handed alpha
Helix 53	AF8	D	560	585	Right-handed alpha
Helix 54	AF9	D	586	589	Right-handed 310
Helix 55	AG1	D	607	620	Right-handed alpha
Helix 56	AG2	D	630	632	Right-handed 310
Helix 57	AG3	D	633	661	Right-handed alpha
Helix 58	AG4	D	670	677	Right-handed alpha
Helix 59	AG5	D	688	697	Right-handed alpha
Helix 60	AG6	D	699	712	Right-handed alpha
Helix 61	AG7	D	720	731	Right-handed alpha
Helix 62	AG8	D	739	749	Right-handed alpha
Helix 63	AG9	D	773	789	Right-handed alpha
Helix 64	AH1	D	789	800	Right-handed alpha
Helix 65	AH2	D	821	850	Right-handed alpha
Helix 66	AH3	D	857	868	Right-handed alpha

There are 20 sheets in PDB entry 9DXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	478	480	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	497	498	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	767	768	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	736	738	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	752	753	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	481	482	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	762	764	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	738	first strand
Strand 2	B	538	543	anti-parallel
Strand 3	B	752	755	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	685	first strand
Strand 2	B	717	718	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	478	480	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	497	498	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	767	768	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	540	first strand
Strand 2	C	736	738	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	752	753	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	437	first strand
Strand 2	D	481	482	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	536	first strand
Strand 2	D	762	764	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	735	738	first strand
Strand 2	D	538	543	anti-parallel
Strand 3	D	752	755	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	685	first strand
Strand 2	D	717	718	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXS