Analysis of interatomic Contacts of Structural Units in PDB entry:
9DXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DXU entry

There are 2 chains in PDB entry 9DXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6PRO 270
B
 TYR 1CYS 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9DXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
46 61Right-handed alpha
Helix 3
AA3
A
62 67Right-handed 310
Helix 4
AA4
A
158 165Right-handed alpha
Helix 5
AA5
A
213 217Right-handed 310
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There are 3 sheets in PDB entry 9DXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
118 135anti-parallel
Strand 3
A
166 176anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
222 226anti-parallel
Strand 6
A
108 112anti-parallel
Strand 7
A
192 209anti-parallel
Strand 8
A
97 103anti-parallel
Strand 9
A
85 92anti-parallel
Strand 10
A
258 260parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
118 135anti-parallel
Strand 3
A
192 209anti-parallel
Strand 4
A
97 103anti-parallel
Strand 5
A
85 92anti-parallel
Strand 6
A
258 260parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
9 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il