Analysis of interatomic Contacts of Structural Units in PDB entry:
9DYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DYP entry

There are 3 chains in PDB entry 9DYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 178
A	ASN 180	VAL 468
B	MET 1	GLY 173

There are 86 helices in PDB entry 9DYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	10	15	Right-handed 310
Helix 3	AA3	A	32	44	Right-handed alpha
Helix 4	AA4	A	71	73	Right-handed 310
Helix 5	AA5	A	83	85	Right-handed 310
Helix 6	AA6	A	90	99	Right-handed alpha
Helix 7	AA7	A	100	105	Right-handed 310
Helix 8	AA8	A	119	124	Right-handed alpha
Helix 9	AA9	A	132	141	Right-handed alpha
Helix 10	AB1	A	159	173	Right-handed alpha
Helix 11	AB2	A	191	211	Right-handed alpha
Helix 12	AB3	A	224	239	Right-handed alpha
Helix 13	AB4	A	254	265	Right-handed alpha
Helix 14	AB5	A	277	282	Right-handed alpha
Helix 15	AB6	A	290	302	Right-handed alpha
Helix 16	AB7	A	320	332	Right-handed alpha
Helix 17	AB8	A	351	363	Right-handed alpha
Helix 18	AB9	A	367	375	Right-handed 310
Helix 19	AC1	A	391	400	Right-handed alpha
Helix 20	AC2	A	409	414	Right-handed alpha
Helix 21	AC3	A	418	436	Right-handed alpha
Helix 22	AC4	A	438	443	Right-handed alpha
Helix 23	AC5	A	446	459	Right-handed alpha
Helix 24	AC6	B	2	6	Right-handed 310
Helix 25	AC7	B	10	15	Right-handed 310
Helix 26	AC8	B	32	44	Right-handed alpha
Helix 27	AC9	B	83	85	Right-handed 310
Helix 28	AD1	B	90	99	Right-handed alpha
Helix 29	AD2	B	100	105	Right-handed 310
Helix 30	AD3	B	119	124	Right-handed alpha
Helix 31	AD4	B	132	141	Right-handed alpha
Helix 32	AD5	B	159	173	Right-handed alpha
Helix 33	AD6	B	191	211	Right-handed alpha
Helix 34	AD7	B	224	239	Right-handed alpha
Helix 35	AD8	B	254	265	Right-handed alpha
Helix 36	AD9	B	277	282	Right-handed alpha
Helix 37	AE1	B	290	302	Right-handed alpha
Helix 38	AE2	B	320	332	Right-handed alpha
Helix 39	AE3	B	351	363	Right-handed alpha
Helix 40	AE4	B	367	375	Right-handed 310
Helix 41	AE5	B	391	400	Right-handed alpha
Helix 42	AE6	B	409	414	Right-handed alpha
Helix 43	AE7	B	418	436	Right-handed alpha
Helix 44	AE8	B	438	443	Right-handed alpha
Helix 45	AE9	B	446	457	Right-handed alpha
Helix 46	AF1	C	32	44	Right-handed alpha
Helix 47	AF2	C	83	85	Right-handed 310
Helix 48	AF3	C	90	99	Right-handed alpha
Helix 49	AF4	C	100	105	Right-handed 310
Helix 50	AF5	C	119	124	Right-handed alpha
Helix 51	AF6	C	132	141	Right-handed alpha
Helix 52	AF7	C	159	173	Right-handed alpha
Helix 53	AF8	C	191	211	Right-handed alpha
Helix 54	AF9	C	224	239	Right-handed alpha
Helix 55	AG1	C	250	254	Right-handed alpha
Helix 56	AG2	C	254	265	Right-handed alpha
Helix 57	AG3	C	277	282	Right-handed alpha
Helix 58	AG4	C	290	302	Right-handed alpha
Helix 59	AG5	C	320	332	Right-handed alpha
Helix 60	AG6	C	355	363	Right-handed alpha
Helix 61	AG7	C	391	400	Right-handed alpha
Helix 62	AG8	C	409	414	Right-handed alpha
Helix 63	AG9	C	418	436	Right-handed alpha
Helix 64	AH1	C	438	443	Right-handed alpha
Helix 65	AH2	C	446	459	Right-handed alpha
Helix 66	AH3	D	2	6	Right-handed 310
Helix 67	AH4	D	10	15	Right-handed 310
Helix 68	AH5	D	32	44	Right-handed alpha
Helix 69	AH6	D	83	85	Right-handed 310
Helix 70	AH7	D	90	99	Right-handed alpha
Helix 71	AH8	D	100	105	Right-handed 310
Helix 72	AH9	D	119	124	Right-handed alpha
Helix 73	AI1	D	132	141	Right-handed alpha
Helix 74	AI2	D	159	173	Right-handed alpha
Helix 75	AI3	D	191	211	Right-handed alpha
Helix 76	AI4	D	224	239	Right-handed alpha
Helix 77	AI5	D	254	265	Right-handed alpha
Helix 78	AI6	D	277	282	Right-handed alpha
Helix 79	AI7	D	290	302	Right-handed alpha
Helix 80	AI8	D	320	332	Right-handed alpha
Helix 81	AI9	D	351	363	Right-handed alpha
Helix 82	AJ1	D	391	400	Right-handed alpha
Helix 83	AJ2	D	409	414	Right-handed alpha
Helix 84	AJ3	D	418	436	Right-handed alpha
Helix 85	AJ4	D	438	444	Right-handed alpha
Helix 86	AJ5	D	446	456	Right-handed alpha

There are 12 sheets in PDB entry 9DYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	18	27	anti-parallel
Strand 4	A	108	117	anti-parallel
Strand 5	A	287	289	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	177	179	parallel
Strand 3	A	215	219	parallel
Strand 4	A	244	249	parallel
Strand 5	A	270	273	parallel
Strand 6	A	305	308	parallel
Strand 7	A	380	383	parallel
Strand 8	A	405	408	parallel
Strand 9	A	147	151	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	341	343	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	70	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	18	27	anti-parallel
Strand 4	B	108	117	anti-parallel
Strand 5	B	287	289	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	177	179	parallel
Strand 3	B	215	219	parallel
Strand 4	B	244	249	parallel
Strand 5	B	269	273	parallel
Strand 6	B	305	308	parallel
Strand 7	B	380	383	parallel
Strand 8	B	405	408	parallel
Strand 9	B	147	150	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	341	343	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	70	first strand
Strand 2	C	75	81	anti-parallel
Strand 3	C	18	27	anti-parallel
Strand 4	C	108	117	anti-parallel
Strand 5	C	287	289	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	177	179	parallel
Strand 3	C	215	219	parallel
Strand 4	C	244	249	parallel
Strand 5	C	270	273	parallel
Strand 6	C	305	308	parallel
Strand 7	C	380	383	parallel
Strand 8	C	405	408	parallel
Strand 9	C	147	151	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	341	343	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	70	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	18	27	anti-parallel
Strand 4	D	108	117	anti-parallel
Strand 5	D	287	289	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	151	first strand
Strand 2	D	177	179	parallel
Strand 3	D	215	219	parallel
Strand 4	D	244	249	parallel
Strand 5	D	270	273	parallel
Strand 6	D	305	308	parallel
Strand 7	D	380	383	parallel
Strand 8	D	405	408	parallel
Strand 9	D	147	151	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	341	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DYP