Analysis of interatomic Contacts of Structural Units in PDB entry:
9DYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DYS entry

There are 2 chains in PDB entry 9DYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 305
B
 MET 1GLN 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9DYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
46 51Right-handed 310
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
72 85Right-handed alpha
Helix 5
AA5
A
117 127Right-handed alpha
Helix 6
AA6
A
138 142Right-handed 310
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
168 170Right-handed 310
Helix 9
AA9
A
205 213Right-handed alpha
Helix 10
AB1
A
239 257Right-handed alpha
Helix 11
AB2
A
283 304Right-handed alpha
Helix 12
AB3
B
1 5Right-handed 310
Helix 13
AB4
B
46 51Right-handed 310
Helix 14
AB5
B
67 71Right-handed 310
Helix 15
AB6
B
72 85Right-handed alpha
Helix 16
AB7
B
117 127Right-handed alpha
Helix 17
AB8
B
138 142Right-handed 310
Helix 18
AB9
B
151 155Right-handed 310
Helix 19
AC1
B
168 170Right-handed 310
Helix 20
AC2
B
205 213Right-handed alpha
Helix 21
AC3
B
239 257Right-handed alpha
Helix 22
AC4
B
283 304Right-handed alpha
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There are 10 sheets in PDB entry 9DYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 15first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
101 103parallel
Strand 5
A
44 45anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
228 237parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
159 166anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
95 96anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
156 157anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
184 186anti-parallel
Strand 3
A
258 259anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 15first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
101 103parallel
Strand 5
B
44 45anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
269 275anti-parallel
Strand 3
B
228 237parallel
Strand 4
B
172 179anti-parallel
Strand 5
B
159 166anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
95 96anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
156 157anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
184 186anti-parallel
Strand 3
B
258 259anti-parallel
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