Analysis of interatomic Contacts of Structural Units in PDB entry:
9DYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DYT entry

There are 2 chains in PDB entry 9DYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	VAL 455
B	ASN 9	VAL 455

There are 32 helices in PDB entry 9DYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	35	Right-handed alpha
Helix 2	AA2	A	59	71	Right-handed alpha
Helix 3	AA3	A	92	104	Right-handed alpha
Helix 4	AA4	A	120	127	Right-handed 310
Helix 5	AA5	A	146	154	Right-handed alpha
Helix 6	AA6	A	162	174	Right-handed alpha
Helix 7	AA7	A	192	194	Right-handed 310
Helix 8	AA8	A	218	220	Right-handed 310
Helix 9	AA9	A	221	230	Right-handed alpha
Helix 10	AB1	A	265	279	Right-handed alpha
Helix 11	AB2	A	294	303	Right-handed alpha
Helix 12	AB3	A	317	323	Right-handed alpha
Helix 13	AB4	A	341	348	Right-handed alpha
Helix 14	AB5	A	386	392	Right-handed alpha
Helix 15	AB6	A	412	416	Right-handed alpha
Helix 16	AB7	A	427	439	Right-handed alpha
Helix 17	AB8	B	22	35	Right-handed alpha
Helix 18	AB9	B	62	72	Right-handed alpha
Helix 19	AC1	B	92	104	Right-handed alpha
Helix 20	AC2	B	120	127	Right-handed 310
Helix 21	AC3	B	146	155	Right-handed alpha
Helix 22	AC4	B	162	174	Right-handed alpha
Helix 23	AC5	B	192	194	Right-handed 310
Helix 24	AC6	B	218	220	Right-handed 310
Helix 25	AC7	B	221	230	Right-handed alpha
Helix 26	AC8	B	265	278	Right-handed alpha
Helix 27	AC9	B	294	303	Right-handed alpha
Helix 28	AD1	B	317	323	Right-handed alpha
Helix 29	AD2	B	341	348	Right-handed alpha
Helix 30	AD3	B	386	392	Right-handed alpha
Helix 31	AD4	B	412	416	Right-handed alpha
Helix 32	AD5	B	427	439	Right-handed alpha

There are 14 sheets in PDB entry 9DYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	11	18	parallel
Strand 3	A	78	83	parallel
Strand 4	A	136	145	anti-parallel
Strand 5	A	109	114	anti-parallel
Strand 6	A	177	180	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	214	216	anti-parallel
Strand 3	A	186	188	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	202	205	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	284	290	parallel
Strand 3	A	255	261	parallel
Strand 4	A	327	332	parallel
Strand 5	A	407	411	anti-parallel
Strand 6	A	356	359	anti-parallel
Strand 7	A	443	446	parallel
Strand 8	A	398	401	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	452	454	anti-parallel
Strand 3	A	362	363	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	403	404	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	382	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	11	18	parallel
Strand 3	B	78	83	parallel
Strand 4	B	136	145	anti-parallel
Strand 5	B	109	114	anti-parallel
Strand 6	B	177	180	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	186	188	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	202	205	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	284	290	parallel
Strand 3	B	255	261	parallel
Strand 4	B	327	332	parallel
Strand 5	B	407	411	anti-parallel
Strand 6	B	356	359	anti-parallel
Strand 7	B	443	446	parallel
Strand 8	B	398	401	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	452	454	anti-parallel
Strand 3	B	362	363	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	403	404	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DYT