Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DZ2 entry

There are 8 chains in PDB entry 9DZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 390	THR 604
I	SER 32	LYS 188
J	LYS 510	ASP 614
A	SER 32	THR 192
B	LYS 510	ASP 614
D	LEU 390	THR 604
E	SER 32	ALA 187
F	LYS 510	ASP 614

There are 34 helices in PDB entry 9DZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	390	398	Right-handed alpha
Helix 2	AA2	C	432	435	Right-handed 310
Helix 3	AA3	C	436	451	Right-handed alpha
Helix 4	AA4	C	463	468	Right-handed alpha
Helix 5	AA5	C	483	489	Right-handed 310
Helix 6	AA6	C	508	517	Right-handed alpha
Helix 7	AA7	C	542	546	Right-handed alpha
Helix 8	AA8	C	554	558	Right-handed 310
Helix 9	AA9	C	573	593	Right-handed alpha
Helix 10	AB1	I	59	61	Right-handed 310
Helix 11	AB2	I	71	74	Right-handed 310
Helix 12	AB3	I	78	83	Right-handed alpha
Helix 13	AB4	J	551	559	Right-handed alpha
Helix 14	AB5	J	564	576	Right-handed alpha
Helix 15	AB6	J	583	599	Right-handed alpha
Helix 16	AB7	A	59	61	Right-handed 310
Helix 17	AB8	A	71	74	Right-handed 310
Helix 18	AB9	B	554	576	Right-handed alpha
Helix 19	AC1	B	583	598	Right-handed alpha
Helix 20	AC2	D	391	398	Right-handed alpha
Helix 21	AC3	D	432	435	Right-handed 310
Helix 22	AC4	D	436	452	Right-handed alpha
Helix 23	AC5	D	463	468	Right-handed alpha
Helix 24	AC6	D	483	489	Right-handed 310
Helix 25	AC7	D	508	517	Right-handed alpha
Helix 26	AC8	D	542	546	Right-handed alpha
Helix 27	AC9	D	554	558	Right-handed 310
Helix 28	AD1	D	573	593	Right-handed alpha
Helix 29	AD2	E	59	61	Right-handed 310
Helix 30	AD3	E	71	74	Right-handed 310
Helix 31	AD4	E	82	84	Right-handed 310
Helix 32	AD5	F	554	563	Right-handed alpha
Helix 33	AD6	F	564	576	Right-handed alpha
Helix 34	AD7	F	583	598	Right-handed alpha

There are 23 sheets in PDB entry 9DZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	568	first strand
Strand 2	C	403	411	anti-parallel
Strand 3	C	600	603	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	429	431	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	460	462	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	548	first strand
Strand 2	C	560	561	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	46	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	177	186	parallel
Strand 4	I	63	69	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	46	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	177	186	parallel
Strand 4	I	159	162	anti-parallel
Strand 5	I	165	167	anti-parallel
Strand 6	I	96	97	anti-parallel
Strand 7	J	580	581	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	89	first strand
Strand 2	I	151	154	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	103	first strand
Strand 2	J	517	519	anti-parallel
Strand 3	J	544	545	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	110	114	first strand
Strand 2	I	140	144	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	177	186	parallel
Strand 4	A	63	69	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	177	186	parallel
Strand 4	A	159	162	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	97	anti-parallel
Strand 7	B	580	581	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	B	517	519	anti-parallel
Strand 3	B	544	545	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	111	first strand
Strand 2	A	135	141	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	567	first strand
Strand 2	D	404	411	anti-parallel
Strand 3	D	600	603	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	429	431	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	460	462	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	548	first strand
Strand 2	D	560	561	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	177	186	parallel
Strand 4	E	63	69	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	177	186	parallel
Strand 4	E	159	161	anti-parallel
Strand 5	E	165	167	anti-parallel
Strand 6	E	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	103	first strand
Strand 2	F	517	519	anti-parallel
Strand 3	F	544	545	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	114	first strand
Strand 2	E	135	144	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZ2