Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DZ4 entry

There are 3 chains in PDB entry 9DZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 28	PRO 1033
B	MET 25	LYS 251
C	GLU 27	HIS 261

There are 16 helices in PDB entry 9DZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	42	Right-handed alpha
Helix 2	AA2	A	43	45	Right-handed 310
Helix 3	AA3	A	53	68	Right-handed alpha
Helix 4	AA4	A	69	71	Right-handed 310
Helix 5	AA5	A	72	81	Right-handed alpha
Helix 6	AA6	A	83	108	Right-handed alpha
Helix 7	AA7	A	822	826	Right-handed 310
Helix 8	AA8	A	926	930	Right-handed 310
Helix 9	AA9	A	948	952	Right-handed 310
Helix 10	AB1	B	147	153	Right-handed alpha
Helix 11	AB2	B	209	214	Right-handed alpha
Helix 12	AB3	B	237	241	Right-handed alpha
Helix 13	AB4	C	113	117	Right-handed 310
Helix 14	AB5	C	159	161	Right-handed 310
Helix 15	AB6	C	188	190	Right-handed 310
Helix 16	AB7	C	219	221	Right-handed 310

There are 36 sheets in PDB entry 9DZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	162	165	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	145	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	187	189	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	145	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	196	197	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	257	261	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	235	243	anti-parallel
Strand 3	A	268	277	anti-parallel
Strand 4	A	281	284	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	235	243	anti-parallel
Strand 3	A	268	277	anti-parallel
Strand 4	A	287	290	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	302	307	anti-parallel
Strand 4	A	552	558	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	341	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	354	359	anti-parallel
Strand 4	A	370	373	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	385	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	398	402	anti-parallel
Strand 4	A	411	412	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	432	436	anti-parallel
Strand 3	A	440	445	anti-parallel
Strand 4	A	457	461	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	471	first strand
Strand 2	A	476	481	anti-parallel
Strand 3	A	486	491	anti-parallel
Strand 4	A	498	499	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	514	first strand
Strand 2	A	519	522	anti-parallel
Strand 3	A	527	530	anti-parallel
Strand 4	A	535	538	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	578	first strand
Strand 2	A	583	588	anti-parallel
Strand 3	A	629	632	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	625	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	640	648	anti-parallel
Strand 4	A	653	656	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	625	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	640	648	anti-parallel
Strand 4	A	660	663	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	686	first strand
Strand 2	A	673	678	anti-parallel
Strand 3	A	924	925	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	708	first strand
Strand 2	A	713	717	anti-parallel
Strand 3	A	722	725	anti-parallel
Strand 4	A	736	737	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	749	first strand
Strand 2	A	755	759	anti-parallel
Strand 3	A	764	769	anti-parallel
Strand 4	A	775	780	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	791	first strand
Strand 2	A	796	801	anti-parallel
Strand 3	A	804	809	anti-parallel
Strand 4	A	816	820	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	835	first strand
Strand 2	A	840	846	anti-parallel
Strand 3	A	851	856	anti-parallel
Strand 4	A	869	870	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	887	first strand
Strand 2	A	890	895	anti-parallel
Strand 3	A	900	904	anti-parallel
Strand 4	A	911	912	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	953	955	first strand
Strand 2	A	962	964	anti-parallel
Strand 3	A	998	1000	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	994	first strand
Strand 2	A	977	983	anti-parallel
Strand 3	A	1010	1018	anti-parallel
Strand 4	A	1021	1022	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	994	first strand
Strand 2	A	977	983	anti-parallel
Strand 3	A	1010	1018	anti-parallel
Strand 4	A	1028	1030	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	97	102	anti-parallel
Strand 3	B	89	94	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	72	76	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	112	117	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	165	first strand
Strand 2	B	199	208	anti-parallel
Strand 3	B	185	189	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	170	176	anti-parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	231	232	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	170	176	anti-parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	235	236	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	48	51	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	139	143	parallel
Strand 3	C	118	120	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	94	99	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	83	86	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	C	167	177	anti-parallel
Strand 3	C	208	217	anti-parallel
Strand 4	C	195	197	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	167	177	anti-parallel
Strand 3	C	208	217	anti-parallel
Strand 4	C	201	202	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	237	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZ4