Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DZC entry

There are 2 chains in PDB entry 9DZC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ARG 328
B
 SER 28ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9DZC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 70Right-handed alpha
Helix 2
AA2
A
71 76Right-handed 310
Helix 3
AA3
A
77 100Right-handed alpha
Helix 4
AA4
A
100 116Right-handed alpha
Helix 5
AA5
A
116 122Right-handed alpha
Helix 6
AA6
A
126 148Right-handed alpha
Helix 7
AA7
A
149 168Right-handed alpha
Helix 8
AA8
A
178 194Right-handed alpha
Helix 9
AA9
A
196 223Right-handed alpha
Helix 10
AB1
A
227 267Right-handed alpha
Helix 11
AB2
A
275 327Right-handed alpha
Helix 12
AB3
B
56 70Right-handed alpha
Helix 13
AB4
B
71 76Right-handed 310
Helix 14
AB5
B
77 100Right-handed alpha
Helix 15
AB6
B
100 116Right-handed alpha
Helix 16
AB7
B
116 121Right-handed alpha
Helix 17
AB8
B
126 148Right-handed alpha
Helix 18
AB9
B
149 168Right-handed alpha
Helix 19
AC1
B
178 194Right-handed alpha
Helix 20
AC2
B
196 223Right-handed alpha
Helix 21
AC3
B
229 268Right-handed alpha
Helix 22
AC4
B
275 329Right-handed alpha
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There are 4 sheets in PDB entry 9DZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
48 50anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
273 274anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
48 50anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
273 274anti-parallel
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