Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DZF entry

There are 5 chains in PDB entry 9DZF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 425
B	GLY 1	PHE 425
C	SER 5	ARG 27
H	GLN 1	SER 124
L	ASP 1	LYS 107

There are 31 helices in PDB entry 9DZF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	35	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	86	101	Right-handed alpha
Helix 4	AA4	A	111	116	Right-handed 310
Helix 5	AA5	A	130	145	Right-handed alpha
Helix 6	AA6	A	162	179	Right-handed alpha
Helix 7	AA7	A	193	203	Right-handed alpha
Helix 8	AA8	A	215	230	Right-handed alpha
Helix 9	AA9	A	266	274	Right-handed alpha
Helix 10	AB1	A	287	306	Right-handed alpha
Helix 11	AB2	A	312	314	Right-handed 310
Helix 12	AB3	A	315	338	Right-handed alpha
Helix 13	AB4	A	344	353	Right-handed alpha
Helix 14	AB5	B	19	35	Right-handed alpha
Helix 15	AB6	B	63	76	Right-handed alpha
Helix 16	AB7	B	86	101	Right-handed alpha
Helix 17	AB8	B	111	116	Right-handed 310
Helix 18	AB9	B	130	145	Right-handed alpha
Helix 19	AC1	B	162	179	Right-handed alpha
Helix 20	AC2	B	193	203	Right-handed alpha
Helix 21	AC3	B	204	206	Right-handed 310
Helix 22	AC4	B	215	230	Right-handed alpha
Helix 23	AC5	B	266	274	Right-handed alpha
Helix 24	AC6	B	287	306	Right-handed alpha
Helix 25	AC7	B	312	314	Right-handed 310
Helix 26	AC8	B	315	338	Right-handed alpha
Helix 27	AC9	B	344	351	Right-handed alpha
Helix 28	AD1	C	13	18	Right-handed 310
Helix 29	AD2	H	28	32	Right-handed 310
Helix 30	AD3	H	87	91	Right-handed 310
Helix 31	AD4	L	79	83	Right-handed 310

There are 12 sheets in PDB entry 9DZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	2	9	parallel
Strand 3	A	80	82	parallel
Strand 4	A	104	106	parallel
Strand 5	A	123	125	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	149	156	parallel
Strand 3	A	209	213	parallel
Strand 4	A	237	241	parallel
Strand 5	A	277	282	parallel
Strand 6	A	376	381	anti-parallel
Strand 7	A	388	395	anti-parallel
Strand 8	A	400	403	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	362	366	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	2	9	parallel
Strand 3	B	80	82	parallel
Strand 4	B	104	106	parallel
Strand 5	B	123	125	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	149	156	parallel
Strand 3	B	209	213	parallel
Strand 4	B	237	241	parallel
Strand 5	B	277	282	parallel
Strand 6	B	376	381	anti-parallel
Strand 7	B	388	395	anti-parallel
Strand 8	B	400	403	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	363	366	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	112	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DZF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZF