Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DZG entry

There are 4 chains in PDB entry 9DZG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 425
B
 GLY 1PHE 425
H
 GLN 1SER 124
L
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9DZG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
86 101Right-handed alpha
Helix 4
AA4
A
111 116Right-handed 310
Helix 5
AA5
A
130 145Right-handed alpha
Helix 6
AA6
A
162 179Right-handed alpha
Helix 7
AA7
A
193 201Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
215 229Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
266 274Right-handed alpha
Helix 12
AB3
A
287 306Right-handed alpha
Helix 13
AB4
A
312 316Right-handed 310
Helix 14
AB5
A
323 336Right-handed alpha
Helix 15
AB6
A
337 339Right-handed 310
Helix 16
AB7
A
344 349Right-handed alpha
Helix 17
AB8
B
19 32Right-handed alpha
Helix 18
AB9
B
64 76Right-handed alpha
Helix 19
AC1
B
89 98Right-handed alpha
Helix 20
AC2
B
111 116Right-handed 310
Helix 21
AC3
B
130 145Right-handed alpha
Helix 22
AC4
B
162 177Right-handed alpha
Helix 23
AC5
B
193 203Right-handed alpha
Helix 24
AC6
B
204 206Right-handed 310
Helix 25
AC7
B
215 229Right-handed alpha
Helix 26
AC8
B
266 274Right-handed alpha
Helix 27
AC9
B
287 304Right-handed alpha
Helix 28
AD1
B
312 314Right-handed 310
Helix 29
AD2
B
315 327Right-handed alpha
Helix 30
AD3
B
327 338Right-handed alpha
Helix 31
AD4
B
344 350Right-handed alpha
Helix 32
AD5
H
28 32Right-handed 310
Helix 33
AD6
H
87 91Right-handed 310
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There are 13 sheets in PDB entry 9DZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
2 8parallel
Strand 3
A
80 82parallel
Strand 4
A
104 106parallel
Strand 5
A
123 125parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
151 154parallel
Strand 3
A
209 213parallel
Strand 4
A
237 241parallel
Strand 5
A
277 282parallel
Strand 6
A
376 381anti-parallel
Strand 7
A
388 395anti-parallel
Strand 8
A
400 403anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
363 366anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
2 8parallel
Strand 3
B
80 82parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
123 125parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 187first strand
Strand 2
B
149 154parallel
Strand 3
B
209 213parallel
Strand 4
B
237 241parallel
Strand 5
B
277 282parallel
Strand 6
B
376 381anti-parallel
Strand 7
B
388 395anti-parallel
Strand 8
B
400 403anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 358first strand
Strand 2
B
363 366anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 5first strand
Strand 2
H
23 25anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
92 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 21first strand
Strand 2
H
78 83anti-parallel
Strand 3
H
69 73anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
98 99first strand
Strand 2
H
112 114anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
46 49anti-parallel
Strand 6
L
53 54anti-parallel
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