Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DZJ entry

There are 7 chains in PDB entry 9DZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	SER 124
L	ASN 1	LYS 106
G	GLN 1	SER 124
K	ASN 1	LYS 106
A	ALA -1	PHE 425
B	ALA -1	PHE 425
C	CYS 7	PHE 26

There are 37 helices in PDB entry 9DZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	30	Right-handed 310
Helix 2	AA2	H	87	91	Right-handed 310
Helix 3	AA3	L	79	83	Right-handed 310
Helix 4	AA4	G	28	30	Right-handed 310
Helix 5	AA5	G	87	91	Right-handed 310
Helix 6	AA6	K	79	83	Right-handed 310
Helix 7	AA7	A	19	37	Right-handed alpha
Helix 8	AA8	A	63	77	Right-handed alpha
Helix 9	AA9	A	86	101	Right-handed alpha
Helix 10	AB1	A	111	116	Right-handed 310
Helix 11	AB2	A	130	145	Right-handed alpha
Helix 12	AB3	A	162	179	Right-handed alpha
Helix 13	AB4	A	193	203	Right-handed alpha
Helix 14	AB5	A	204	206	Right-handed 310
Helix 15	AB6	A	215	230	Right-handed alpha
Helix 16	AB7	A	245	249	Right-handed 310
Helix 17	AB8	A	266	275	Right-handed alpha
Helix 18	AB9	A	287	306	Right-handed alpha
Helix 19	AC1	A	312	314	Right-handed 310
Helix 20	AC2	A	315	337	Right-handed alpha
Helix 21	AC3	A	344	353	Right-handed alpha
Helix 22	AC4	B	19	35	Right-handed alpha
Helix 23	AC5	B	63	77	Right-handed alpha
Helix 24	AC6	B	86	101	Right-handed alpha
Helix 25	AC7	B	111	116	Right-handed 310
Helix 26	AC8	B	129	145	Right-handed alpha
Helix 27	AC9	B	162	179	Right-handed alpha
Helix 28	AD1	B	193	203	Right-handed alpha
Helix 29	AD2	B	204	206	Right-handed 310
Helix 30	AD3	B	215	230	Right-handed alpha
Helix 31	AD4	B	245	249	Right-handed 310
Helix 32	AD5	B	266	274	Right-handed alpha
Helix 33	AD6	B	287	306	Right-handed alpha
Helix 34	AD7	B	312	314	Right-handed 310
Helix 35	AD8	B	315	337	Right-handed alpha
Helix 36	AD9	B	344	353	Right-handed alpha
Helix 37	AE1	C	13	18	Right-handed 310

There are 20 sheets in PDB entry 9DZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	72	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	113	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	69	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	72	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	45	52	anti-parallel
Strand 6	G	57	58	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	113	114	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	29	anti-parallel
Strand 3	K	62	75	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	101	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	101	105	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	96	97	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	1	9	parallel
Strand 3	A	80	82	parallel
Strand 4	A	104	106	parallel
Strand 5	A	123	125	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	149	156	parallel
Strand 3	A	209	213	parallel
Strand 4	A	237	241	parallel
Strand 5	A	277	282	parallel
Strand 6	A	376	381	anti-parallel
Strand 7	A	388	395	anti-parallel
Strand 8	A	400	403	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	359	first strand
Strand 2	A	362	365	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	52	first strand
Strand 2	B	1	9	parallel
Strand 3	B	80	82	parallel
Strand 4	B	104	106	parallel
Strand 5	B	123	125	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	149	156	parallel
Strand 3	B	209	213	parallel
Strand 4	B	237	241	parallel
Strand 5	B	277	282	parallel
Strand 6	B	376	381	anti-parallel
Strand 7	B	388	395	anti-parallel
Strand 8	B	400	403	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	363	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZJ