Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DZK entry

There are 4 chains in PDB entry 9DZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA -1PHE 425
H
 GLN 1SER 124
L
 ASN 1LYS 106
A
 GLY 1PHE 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9DZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
19 36Right-handed alpha
Helix 2
AA2
B
63 76Right-handed alpha
Helix 3
AA3
B
86 101Right-handed alpha
Helix 4
AA4
B
111 116Right-handed 310
Helix 5
AA5
B
130 145Right-handed alpha
Helix 6
AA6
B
162 179Right-handed alpha
Helix 7
AA7
B
193 207Right-handed alpha
Helix 8
AA8
B
215 230Right-handed alpha
Helix 9
AA9
B
245 249Right-handed 310
Helix 10
AB1
B
267 275Right-handed alpha
Helix 11
AB2
B
287 306Right-handed alpha
Helix 12
AB3
B
312 314Right-handed 310
Helix 13
AB4
B
315 337Right-handed alpha
Helix 14
AB5
B
344 353Right-handed alpha
Helix 15
AB6
H
28 30Right-handed 310
Helix 16
AB7
H
87 91Right-handed 310
Helix 17
AB8
L
79 83Right-handed 310
Helix 18
AB9
A
19 36Right-handed alpha
Helix 19
AC1
A
63 77Right-handed alpha
Helix 20
AC2
A
86 101Right-handed alpha
Helix 21
AC3
A
111 115Right-handed 310
Helix 22
AC4
A
130 145Right-handed alpha
Helix 23
AC5
A
162 179Right-handed alpha
Helix 24
AC6
A
193 203Right-handed alpha
Helix 25
AC7
A
215 229Right-handed alpha
Helix 26
AC8
A
245 249Right-handed 310
Helix 27
AC9
A
266 275Right-handed alpha
Helix 28
AD1
A
287 306Right-handed alpha
Helix 29
AD2
A
315 338Right-handed alpha
Helix 30
AD3
A
344 353Right-handed alpha
Helix 31
AD4
A
405 407Right-handed 310
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There are 12 sheets in PDB entry 9DZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
2 8parallel
Strand 3
B
80 82parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
123 125parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
149 156parallel
Strand 3
B
209 213parallel
Strand 4
B
237 241parallel
Strand 5
B
277 282parallel
Strand 6
B
376 381anti-parallel
Strand 7
B
388 395anti-parallel
Strand 8
B
400 403anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
362 366anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
113 114anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
101 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
2 7parallel
Strand 3
A
80 82parallel
Strand 4
A
104 106parallel
Strand 5
A
123 125parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
149 154parallel
Strand 3
A
209 212parallel
Strand 4
A
237 241parallel
Strand 5
A
277 282parallel
Strand 6
A
376 381anti-parallel
Strand 7
A
388 395anti-parallel
Strand 8
A
400 403anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
362 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il