Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DZQ entry

There are 10 chains in PDB entry 9DZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	CYS 454
C	LEU 29	TRP 120
E	ILE 29	PHE 102
G	VAL 2	SER 120
I	ILE 2	LYS 111
B	ARG 24	CYS 454
D	LEU 29	TRP 120
F	ILE 29	PHE 102
H	VAL 2	SER 120
J	ILE 2	LYS 111

There are 21 helices in PDB entry 9DZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	40	Right-handed alpha
Helix 2	AA2	A	131	135	Right-handed 310
Helix 3	AA3	A	158	165	Right-handed alpha
Helix 4	AA4	A	188	190	Right-handed 310
Helix 5	AA5	A	242	249	Right-handed alpha
Helix 6	AA6	A	250	251	Right-handed 310
Helix 7	AA7	A	252	256	Right-handed 310
Helix 8	AA8	E	49	53	Right-handed 310
Helix 9	AA9	G	28	32	Right-handed 310
Helix 10	AB1	G	87	91	Right-handed 310
Helix 11	AB2	I	84	88	Right-handed 310
Helix 12	AB3	B	35	40	Right-handed alpha
Helix 13	AB4	B	131	135	Right-handed 310
Helix 14	AB5	B	158	165	Right-handed alpha
Helix 15	AB6	B	188	190	Right-handed 310
Helix 16	AB7	B	242	249	Right-handed alpha
Helix 17	AB8	B	250	251	Right-handed 310
Helix 18	AB9	B	252	256	Right-handed 310
Helix 19	AC1	F	49	53	Right-handed 310
Helix 20	AC2	H	87	91	Right-handed 310
Helix 21	AC3	J	84	88	Right-handed 310

There are 31 sheets in PDB entry 9DZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	411	421	anti-parallel
Strand 3	A	424	434	anti-parallel
Strand 4	A	441	449	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	452	453	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	B	66	67	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	B	61	62	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	81	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	103	114	anti-parallel
Strand 4	A	120	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	144	first strand
Strand 2	A	147	153	anti-parallel
Strand 3	A	171	176	anti-parallel
Strand 4	A	186	187	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	276	280	parallel
Strand 3	A	263	268	anti-parallel
Strand 4	A	214	220	anti-parallel
Strand 5	A	202	203	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	276	280	parallel
Strand 3	A	263	268	anti-parallel
Strand 4	A	214	220	anti-parallel
Strand 5	A	209	211	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	298	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	316	320	anti-parallel
Strand 4	A	330	333	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	368	first strand
Strand 2	A	371	379	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	398	403	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	98	100	anti-parallel
Strand 5	C	116	117	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	100	101	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	17	24	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	69	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	44	51	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	108	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	22	25	anti-parallel
Strand 3	I	75	80	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	106	110	parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	38	43	anti-parallel
Strand 5	I	51	54	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	411	421	anti-parallel
Strand 3	B	424	434	anti-parallel
Strand 4	B	441	449	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	452	453	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	81	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	103	114	anti-parallel
Strand 4	B	120	126	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	144	first strand
Strand 2	B	147	153	anti-parallel
Strand 3	B	171	176	anti-parallel
Strand 4	B	186	187	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	276	280	parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	214	220	anti-parallel
Strand 5	B	202	203	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	276	280	parallel
Strand 3	B	263	268	anti-parallel
Strand 4	B	214	220	anti-parallel
Strand 5	B	209	211	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	298	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	330	333	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	371	379	anti-parallel
Strand 3	B	388	393	anti-parallel
Strand 4	B	398	403	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	59	60	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	115	117	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	90	92	anti-parallel
Strand 3	F	100	101	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	44	51	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	108	111	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	22	25	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	106	110	parallel
Strand 3	J	90	95	anti-parallel
Strand 4	J	38	43	anti-parallel
Strand 5	J	51	54	anti-parallel
Strand 6	J	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZQ