Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DZS entry

There is 1 chain in PDB entry 9DZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10VAL 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9DZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
92 104Right-handed alpha
Helix 4
AA4
A
120 127Right-handed 310
Helix 5
AA5
A
146 154Right-handed alpha
Helix 6
AA6
A
162 174Right-handed alpha
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
218 220Right-handed 310
Helix 9
AA9
A
221 230Right-handed alpha
Helix 10
AB1
A
265 278Right-handed alpha
Helix 11
AB2
A
317 323Right-handed alpha
Helix 12
AB3
A
341 348Right-handed alpha
Helix 13
AB4
A
386 392Right-handed alpha
Helix 14
AB5
A
412 416Right-handed alpha
Helix 15
AB6
A
427 439Right-handed alpha
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There are 7 sheets in PDB entry 9DZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
11 18parallel
Strand 3
A
78 83parallel
Strand 4
A
136 145anti-parallel
Strand 5
A
109 114anti-parallel
Strand 6
A
177 180parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
214 216anti-parallel
Strand 3
A
186 188parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
202 205anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
284 290parallel
Strand 3
A
255 261parallel
Strand 4
A
327 332parallel
Strand 5
A
407 411anti-parallel
Strand 6
A
356 359anti-parallel
Strand 7
A
443 446parallel
Strand 8
A
398 401anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
452 454anti-parallel
Strand 3
A
362 363parallel
Strand 4
A
366 370anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
403 404anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il