Analysis of interatomic Contacts of Structural Units in PDB entry:
9DZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DZV entry

There are 2 chains in PDB entry 9DZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 48PRO 396
A
 PRO 44ALA 1318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9DZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
48 76Right-handed alpha
Helix 2
AA2
B
84 88Right-handed 310
Helix 3
AA3
B
101 103Right-handed 310
Helix 4
AA4
B
116 120Right-handed 310
Helix 5
AA5
B
168 173Right-handed alpha
Helix 6
AA6
B
176 182Right-handed alpha
Helix 7
AA7
B
186 192Right-handed alpha
Helix 8
AA8
B
209 215Right-handed alpha
Helix 9
AA9
B
250 254Right-handed 310
Helix 10
AB1
B
290 297Right-handed alpha
Helix 11
AB2
B
332 336Right-handed 310
Helix 12
AB3
B
354 381Right-handed alpha
Helix 13
AB4
A
86 97Right-handed alpha
Helix 14
AB5
A
99 113Right-handed alpha
Helix 15
AB6
A
120 154Right-handed alpha
Helix 16
AB7
A
313 318Right-handed 310
Helix 17
AB8
A
321 326Right-handed alpha
Helix 18
AB9
A
394 399Right-handed alpha
Helix 19
AC1
A
407 445Right-handed alpha
Helix 20
AC2
A
459 475Right-handed alpha
Helix 21
AC3
A
482 501Right-handed alpha
Helix 22
AC4
A
524 529Right-handed 310
Helix 23
AC5
A
628 633Right-handed alpha
Helix 24
AC6
A
637 653Right-handed alpha
Helix 25
AC7
A
672 685Right-handed alpha
Helix 26
AC8
A
745 752Right-handed alpha
Helix 27
AC9
A
758 776Right-handed alpha
Helix 28
AD1
A
789 805Right-handed alpha
Helix 29
AD2
A
810 822Right-handed alpha
Helix 30
AD3
A
840 850Right-handed alpha
Helix 31
AD4
A
863 866Right-handed 310
Helix 32
AD5
A
867 872Right-handed alpha
Helix 33
AD6
A
891 905Right-handed alpha
Helix 34
AD7
A
907 915Right-handed alpha
Helix 35
AD8
A
957 966Right-handed alpha
Helix 36
AD9
A
967 979Right-handed alpha
Helix 37
AE1
A
989 1005Right-handed alpha
Helix 38
AE2
A
1014 1023Right-handed alpha
Helix 39
AE3
A
1036 1041Right-handed alpha
Helix 40
AE4
A
1048 1090Right-handed alpha
Helix 41
AE5
A
1101 1107Right-handed alpha
Helix 42
AE6
A
1114 1124Right-handed alpha
Helix 43
AE7
A
1128 1135Right-handed alpha
Helix 44
AE8
A
1136 1138Right-handed 310
Helix 45
AE9
A
1139 1144Right-handed alpha
Helix 46
AF1
A
1150 1176Right-handed alpha
Helix 47
AF2
A
1188 1211Right-handed alpha
Helix 48
AF3
A
1217 1224Right-handed alpha
Helix 49
AF4
A
1225 1238Right-handed alpha
Helix 50
AF5
A
1251 1256Right-handed alpha
Helix 51
AF6
A
1259 1287Right-handed alpha
Helix 52
AF7
A
1290 1302Right-handed alpha
Helix 53
AF8
A
1306 1310Right-handed 310
Helix 54
AF9
A
1313 1317Right-handed 310
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There are 10 sheets in PDB entry 9DZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
79 82anti-parallel
Strand 3
B
339 345anti-parallel
Strand 4
B
155 161anti-parallel
Strand 5
B
305 312anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
320 327anti-parallel
Strand 5
B
146 147anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
320 327anti-parallel
Strand 5
B
224 226anti-parallel
Strand 6
B
236 237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
204 205anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
382 385anti-parallel
Strand 4
A
285 286anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
345 347anti-parallel
Strand 3
A
362 364anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
511 513anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
1044 1046anti-parallel
Strand 3
A
1026 1030parallel
Strand 4
A
1008 1012parallel
Strand 5
A
531 534parallel
Strand 6
A
854 859parallel
Strand 7
A
983 986parallel
Strand 8
A
953 955parallel
Strand 9
A
884 885parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 551first strand
Strand 2
A
829 834anti-parallel
Strand 3
A
779 788anti-parallel
Strand 4
A
738 744anti-parallel
Strand 5
A
727 731anti-parallel
Strand 6
A
707 712anti-parallel
Strand 7
A
696 699anti-parallel
Strand 8
A
689 691anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
668 669anti-parallel
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