Analysis of interatomic Contacts of Structural Units in PDB entry:
9E01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E01 entry

There are 9 chains in PDB entry 9E01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LYS 64
A
 ASP 5TYR 236
G
 MET 1SER 27
C
 ASP 5TYR 236
E
 ASP 5TYR 236
D
 MET 1LYS 64
F
 MET 1LYS 64
H
 MET 1SER 27
I
 MET 1SER 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9E01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 20Right-handed alpha
Helix 2
AA2
B
24 64Right-handed alpha
Helix 3
AA3
A
8 35Right-handed alpha
Helix 4
AA4
A
37 53Right-handed alpha
Helix 5
AA5
A
65 83Right-handed alpha
Helix 6
AA6
A
83 96Right-handed alpha
Helix 7
AA7
A
100 128Right-handed alpha
Helix 8
AA8
A
128 138Right-handed alpha
Helix 9
AA9
A
150 182Right-handed alpha
Helix 10
AB1
A
185 192Right-handed alpha
Helix 11
AB2
A
192 208Right-handed alpha
Helix 12
AB3
A
211 235Right-handed alpha
Helix 13
AB4
G
2 27Right-handed alpha
Helix 14
AB5
C
8 36Right-handed alpha
Helix 15
AB6
C
37 53Right-handed alpha
Helix 16
AB7
C
65 83Right-handed alpha
Helix 17
AB8
C
83 96Right-handed alpha
Helix 18
AB9
C
100 128Right-handed alpha
Helix 19
AC1
C
128 138Right-handed alpha
Helix 20
AC2
C
150 181Right-handed alpha
Helix 21
AC3
C
185 192Right-handed alpha
Helix 22
AC4
C
192 208Right-handed alpha
Helix 23
AC5
C
211 235Right-handed alpha
Helix 24
AC6
E
8 35Right-handed alpha
Helix 25
AC7
E
37 53Right-handed alpha
Helix 26
AC8
E
65 83Right-handed alpha
Helix 27
AC9
E
83 96Right-handed alpha
Helix 28
AD1
E
100 128Right-handed alpha
Helix 29
AD2
E
128 138Right-handed alpha
Helix 30
AD3
E
150 182Right-handed alpha
Helix 31
AD4
E
185 192Right-handed alpha
Helix 32
AD5
E
192 208Right-handed alpha
Helix 33
AD6
E
211 235Right-handed alpha
Helix 34
AD7
D
5 20Right-handed alpha
Helix 35
AD8
D
24 64Right-handed alpha
Helix 36
AD9
F
5 20Right-handed alpha
Helix 37
AE1
F
24 64Right-handed alpha
Helix 38
AE2
H
2 21Right-handed alpha
Helix 39
AE3
H
21 27Right-handed alpha
Helix 40
AE4
I
2 27Right-handed alpha
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There are 3 sheets in PDB entry 9E01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
C
146 147parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
E
59 61parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
E
145 147parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il