Analysis of interatomic Contacts of Structural Units in PDB entry:
9E04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E04 entry

There are 9 chains in PDB entry 9E04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 MET 1LEU 19
B
 MET 1SER 48
A
 SER 4VAL 336
D
 MET 1SER 48
F
 MET 1SER 48
E
 SER 4VAL 336
C
 SER 4VAL 336
I
 MET 1LEU 19
G
 MET 1LEU 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9E04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
2 17Right-handed alpha
Helix 2
AA2
B
5 20Right-handed alpha
Helix 3
AA3
B
25 47Right-handed alpha
Helix 4
AA4
A
5 33Right-handed alpha
Helix 5
AA5
A
33 61Right-handed alpha
Helix 6
AA6
A
165 196Right-handed alpha
Helix 7
AA7
A
197 199Right-handed 310
Helix 8
AA8
A
203 228Right-handed alpha
Helix 9
AA9
A
229 241Right-handed alpha
Helix 10
AB1
A
251 281Right-handed alpha
Helix 11
AB2
A
285 292Right-handed alpha
Helix 12
AB3
A
292 308Right-handed alpha
Helix 13
AB4
A
311 335Right-handed alpha
Helix 14
AB5
D
5 20Right-handed alpha
Helix 15
AB6
D
24 47Right-handed alpha
Helix 16
AB7
F
5 20Right-handed alpha
Helix 17
AB8
F
24 47Right-handed alpha
Helix 18
AB9
E
5 33Right-handed alpha
Helix 19
AC1
E
33 61Right-handed alpha
Helix 20
AC2
E
165 196Right-handed alpha
Helix 21
AC3
E
197 199Right-handed 310
Helix 22
AC4
E
203 228Right-handed alpha
Helix 23
AC5
E
229 241Right-handed alpha
Helix 24
AC6
E
251 281Right-handed alpha
Helix 25
AC7
E
285 292Right-handed alpha
Helix 26
AC8
E
292 308Right-handed alpha
Helix 27
AC9
E
311 336Right-handed alpha
Helix 28
AD1
C
5 33Right-handed alpha
Helix 29
AD2
C
33 61Right-handed alpha
Helix 30
AD3
C
165 196Right-handed alpha
Helix 31
AD4
C
197 199Right-handed 310
Helix 32
AD5
C
203 228Right-handed alpha
Helix 33
AD6
C
229 241Right-handed alpha
Helix 34
AD7
C
251 281Right-handed alpha
Helix 35
AD8
C
285 292Right-handed alpha
Helix 36
AD9
C
292 308Right-handed alpha
Helix 37
AE1
C
311 335Right-handed alpha
Helix 38
AE2
I
2 17Right-handed alpha
Helix 39
AE3
G
2 17Right-handed alpha
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There are 2 sheets in PDB entry 9E04. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
159 161parallel
Strand 3
C
246 250parallel
Strand 4
C
158 161parallel
Strand 5
E
246 247parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
E
159 161parallel
Strand 3
E
249 250parallel
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