Analysis of interatomic Contacts of Structural Units in PDB entry:
9E06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E06 entry

There are 6 chains in PDB entry 9E06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1THR 42
A
 SER 4VAL 336
F
 MET 1THR 42
D
 MET 1THR 42
E
 SER 4VAL 336
C
 SER 4VAL 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9E06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 21Right-handed alpha
Helix 2
AA2
B
24 42Right-handed alpha
Helix 3
AA3
A
5 33Right-handed alpha
Helix 4
AA4
A
33 61Right-handed alpha
Helix 5
AA5
A
165 196Right-handed alpha
Helix 6
AA6
A
200 205Right-handed alpha
Helix 7
AA7
A
206 228Right-handed alpha
Helix 8
AA8
A
228 241Right-handed alpha
Helix 9
AA9
A
250 282Right-handed alpha
Helix 10
AB1
A
285 292Right-handed alpha
Helix 11
AB2
A
292 307Right-handed alpha
Helix 12
AB3
A
311 336Right-handed alpha
Helix 13
AB4
F
5 21Right-handed alpha
Helix 14
AB5
F
24 42Right-handed alpha
Helix 15
AB6
D
5 21Right-handed alpha
Helix 16
AB7
D
24 42Right-handed alpha
Helix 17
AB8
E
5 33Right-handed alpha
Helix 18
AB9
E
33 60Right-handed alpha
Helix 19
AC1
E
165 196Right-handed alpha
Helix 20
AC2
E
200 205Right-handed alpha
Helix 21
AC3
E
207 228Right-handed alpha
Helix 22
AC4
E
228 241Right-handed alpha
Helix 23
AC5
E
250 282Right-handed alpha
Helix 24
AC6
E
285 292Right-handed alpha
Helix 25
AC7
E
292 307Right-handed alpha
Helix 26
AC8
E
311 336Right-handed alpha
Helix 27
AC9
C
5 33Right-handed alpha
Helix 28
AD1
C
33 60Right-handed alpha
Helix 29
AD2
C
165 196Right-handed alpha
Helix 30
AD3
C
200 228Right-handed alpha
Helix 31
AD4
C
229 241Right-handed alpha
Helix 32
AD5
C
250 282Right-handed alpha
Helix 33
AD6
C
285 292Right-handed alpha
Helix 34
AD7
C
292 307Right-handed alpha
Helix 35
AD8
C
311 336Right-handed alpha
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There are 3 sheets in PDB entry 9E06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
E
246 247parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
C
160 161parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
160 161first strand
Strand 2
C
246 247parallel
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