Analysis of interatomic Contacts of Structural Units in PDB entry:
9E08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E08 entry

There are 2 chains in PDB entry 9E08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 36	ARG 548
B	ASP 36	ARG 548

There are 18 helices in PDB entry 9E08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	60	Right-handed alpha
Helix 2	AA2	A	70	75	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	88	91	Right-handed 310
Helix 5	AA5	A	134	136	Right-handed 310
Helix 6	AA6	A	345	349	Right-handed 310
Helix 7	AA7	A	355	359	Right-handed 310
Helix 8	AA8	A	463	468	Right-handed alpha
Helix 9	AA9	A	538	542	Right-handed 310
Helix 10	AB1	B	46	60	Right-handed alpha
Helix 11	AB2	B	70	75	Right-handed alpha
Helix 12	AB3	B	77	83	Right-handed alpha
Helix 13	AB4	B	88	91	Right-handed 310
Helix 14	AB5	B	134	136	Right-handed 310
Helix 15	AB6	B	345	349	Right-handed 310
Helix 16	AB7	B	355	359	Right-handed 310
Helix 17	AB8	B	463	468	Right-handed alpha
Helix 18	AB9	B	538	542	Right-handed 310

There are 18 sheets in PDB entry 9E08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	127	131	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	213	220	parallel
Strand 5	A	228	236	anti-parallel
Strand 6	A	240	250	anti-parallel
Strand 7	A	255	265	anti-parallel
Strand 8	A	405	414	anti-parallel
Strand 9	A	362	366	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	138	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	160	164	anti-parallel
Strand 3	A	173	178	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	272	279	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	272	279	anti-parallel
Strand 3	A	390	396	anti-parallel
Strand 4	A	373	379	anti-parallel
Strand 5	A	325	331	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	283	first strand
Strand 2	A	298	299	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	303	307	anti-parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	529	534	parallel
Strand 5	A	513	520	anti-parallel
Strand 6	A	473	478	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	434	first strand
Strand 2	A	453	460	anti-parallel
Strand 3	A	496	504	anti-parallel
Strand 4	A	482	483	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	434	first strand
Strand 2	A	453	460	anti-parallel
Strand 3	A	496	504	anti-parallel
Strand 4	A	487	491	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	127	131	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	213	220	parallel
Strand 5	B	228	236	anti-parallel
Strand 6	B	240	250	anti-parallel
Strand 7	B	255	265	anti-parallel
Strand 8	B	405	414	anti-parallel
Strand 9	B	362	366	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	138	139	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	160	164	anti-parallel
Strand 3	B	173	178	anti-parallel
Strand 4	B	184	185	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	272	279	anti-parallel
Strand 3	B	199	201	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	272	279	anti-parallel
Strand 3	B	390	396	anti-parallel
Strand 4	B	373	379	anti-parallel
Strand 5	B	325	331	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	298	299	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	303	307	anti-parallel
Strand 3	B	313	317	anti-parallel
Strand 4	B	529	534	parallel
Strand 5	B	513	520	anti-parallel
Strand 6	B	473	478	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	434	first strand
Strand 2	B	453	460	anti-parallel
Strand 3	B	496	504	anti-parallel
Strand 4	B	482	483	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	434	first strand
Strand 2	B	453	460	anti-parallel
Strand 3	B	496	504	anti-parallel
Strand 4	B	487	491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E08

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E08